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...pinion, one or the other should change (the behavior of data, or the documentation). <bleep> <bleep>, ~ Malcolm > -----Original Message----- > From: peter dalgaard [mailto:pdalgd at gmail.com] > Sent: Thursday, February 18, 2016 3:32 PM > To: Cook, Malcolm <MEC at stowers.org> > Cc: r-devel at stat.math.ethz.ch > Subject: Re: [Rd] should `data` respect default.stringsAsFactors()? > > What the <bleep> are you on about? data() does many things, only some of > which call read.table() et al., and the ones that do have no special treatment...

I am having problems burning DVD's from commandline. I was wondering if anyone else has had any luck using cdrecord-2.01 and cdrtools that is supposed to add DVD support? Thanks! -- Dexter -- Dexter Fitzgerald Stowers Systems Programmer I Systems Administrator Unix/Linux Systems 142 Freeman Hall College of Engineering and Sciences GSEC, GCIH, GCIA, RHCT, RHCE -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.centos.org/pipermail/centos/attachments/20080602/15b9473e...

...;- read.table(foo.txt,.....) dd$cook <- factor(dd$cook, levels=c("rare","medium","well-done")) etc. -pd > On 19 Feb 2016, at 01:39 , Joshua Ulrich <josh.m.ulrich at gmail.com> wrote: > > On Thu, Feb 18, 2016 at 6:03 PM, Cook, Malcolm <MEC at stowers.org> wrote: >> Hi Peter, >> >> Sorry if I was not clear. Perhaps an example will make my point: >> >>> data(iris) >>> class(iris$Species) >> [1] "factor" >>> write.table(iris,'data/myiris.tab') >>> data(myiri...

...installed. So, I am also in general interested in what other people are doing to this end. But I am most interested in: * is this a good idea * is there a worked out solution * does biocLite introduce special cases * where do the dragons lurk ... and the like Any tips? Thanks, ~ Malcolm Cook Stowers Institute / Computation Biology / Shilatifard Lab

Hi all. I'd like know what is the format file saved by Leica Microsystems TCS SP2-AOBS equipped with a SP2-FCS2 Leica Microsystems workstation its datas. Cause it save in *.fcs extention file but ins't flow cytometry standart format file... Tahnks Horacio.

Hi, I have been looking for CentOS for sparc based machines without luck. I tried to use birorrent to download it without luck. I really would appreciate anyone letting me know because I have a Sun Ultra 60 that I would love to install it on. Thanks! -- Dexter Dexter F. Stowers Systems Administrator Unix/Linux/Windows/Mac Clemson University -- Desire is the ingredient that changes the hot water of mediocrity to the steam of outstanding success. It's the ingredient that enables a person with average ability to successfully compete with those who have far more. Abil...

Hi, I have a server that has been running Centos for about a year but I have not checked to see if there have been any changes to update. Has there been any updates or fixes for the update? I have not been in the loop for a while now. Thanks! -- Dexter Desire is the ingredient that changes the hot water of mediocrity to the steam of outstanding success. It's the ingredient that enables a

...ue,t.stat=tTest$stat)) } Using an lapply statement, as in: myResults <- lapply(aList, myFnc) The goal would be to report on the progress of the lapply() function during processing. Any suggestion would be greatly appreciated. Thanks Marco -- Marco Blanchette, Ph.D. Assistant Investigator Stowers Institute for Medical Research 1000 East 50th St. Kansas City, MO 64110 Tel: 816-926-4071 Cell: 816-726-8419 Fax: 816-926-2018

...llowing: t levels 4 1 1 1 4 1 3 2 7 2 9 2 2 2 I tried unlist without success. I also do remember that there is a corresponding function that create a list of t's according to the level from the matrix a draw but no luck to remember it. Thanks -- Marco Blanchette, Ph.D. Assistant Investigator Stowers Institute for Medical Research 1000 East 50th St. Kansas City, MO 64110 Tel: 816-926-4071 Cell: 816-726-8419 Fax: 816-926-2018

...looking for. It seems like maybe it's smoothing the date data instead of discharge? I tried messing around with other ways of inputting the data and I was getting errors about the input being type "text" and "double" or something like that. I read up on: http://research.stowers-institute.org/efg/R/Statistics/loess.htm http://research.stowers-institute.org/efg/R/Statistics/loess.htm but I was unable to figure out what I am doing wrong. Does anyone have any suggestions to offer? Thanks. Billy -- View this message in context: http://r.789695.n4.nabble.com/Difficulty-w...

...so they can have a column name too, and then suppress the row names in the write.csv. What am I missing? Is there an easy way to fill this blank field with a useful name for a database key when using write.csv defaults? Thanks for any insight on this. efg Earl F. Glynn Scientific Programmer Stowers Institute for Medical Research

Use all.equal instead of identical if you want to gloss over integer/numeric class differences and minor floating point differences (and a host of others). Bill Dunlap TIBCO Software wdunlap tibco.com On Mon, Apr 11, 2016 at 5:25 PM, Paulson, Ariel <apa at stowers.org> wrote: > Hi Jeff, > > > We are splitting hairs because R is splitting hairs, and causing us > problems. Integer and numeric are different R classes with different > properties, mathematical relationships notwithstanding. For instance, the > counterintuitive result:...

Hi all, excuse me by this elementary question. I wish to know if a package in language R exists to analyze FCS (Fluorescence Correlation Spectroscopy) datas. And, if it possible, in addition can read the archives in raw format generated by the ConfoCor2 program. Thanks Horacio. **************************************************************************** Dr. Horacio Castellini

Looking for recommendations.... On WinXP, I use MusicMatch Jukebox version 9 for all my tinkering with mp3s. What do you guys use that would match the functionality of MMJB? I'm mainly interested in the music library setup of MMJB... -- --- David Woyciesjes

...traffic on the network. I want the result of the function getData(), the object mArrayData, propagated to the cluster only once and be available to downstream functions. Hope this is clear and that a solution will be possible. Many thanks Marco -- Marco Blanchette, Ph.D. Assistant Investigator Stowers Institute for Medical Research 1000 East 50th St. Kansas City, MO 64110 Tel: 816-926-4071 Cell: 816-726-8419 Fax: 816-926-2018

...g the developer of the (wonderful) sqldf package since it requires tcltk and you might like to make this dependence optional to the user (at least until this is fixed in tcltk). Am I mistaken in calling this a 'bug'? Any insights appreciated! Thanks, Malcolm Cook Computational Biology - Stowers Institute for Medical Research > system(intern=TRUE,'yes | head ') [1] "y" "y" "y" "y" "y" "y" "y" "y" "y" "y" > library(tcltk) Loading Tcl/Tk interface ... done > system(intern=...

On Thu, Feb 18, 2016 at 6:03 PM, Cook, Malcolm <MEC at stowers.org> wrote: > Hi Peter, > > Sorry if I was not clear. Perhaps an example will make my point: > >> data(iris) >> class(iris$Species) > [1] "factor" >> write.table(iris,'data/myiris.tab') >> data(myiris) >> class(myiris$Species) >...

...ction1] var1=value1 var2=value2 [Section2] A=value3 B=value4 ... >From Google and other searches I haven't found any package, or function within a package, that reads .INI files into an R list, or other data structure. Any suggestions, or do I need to write my own? efg Earl F. Glynn Stowers Institute for Medical Research

Hiya, Probably been debated elsewhere.... I note that R's `data` function does not respect default.stringsAsFactors By my lights, it should, especially as it is documented to call read.table, which DOES respect. Oh, but: http://r.789695.n4.nabble.com/stringsAsFactors-FALSE-tp921891p921893.html Compelling. I have to agree. So, I change my mind. By my lights, `data` should then be

...e formed as the Lance-Williams recursive formulation, they just require the initial distance between observations. See here: http://en.wikipedia.org/wiki/Ward%27s_method It is said that you have to use euclidean distance between the initial observations. However i have found this: http://research.stowers-institute.org/efg/R/Visualization/cor-cluster/ where they use pearson's correlation for hierarchical clustering. Any idea if anything is violated in case pearson's correlation is used with Ward's linkage function? the dissimilarity of pearson's correlation can be defined as d =...