search for: sinking

Hi Eric,I tried as you suggested but I could not find the output in the text file I created (attr.txt) net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")sink("C://Users//Priya//Desktop//Attractor analysis_all genes//synaptogenesis//attr.txt") sink() attr <- getAttractors(net,

Hello, How can I add notes (i.e. text) to a sink output? sink("test.txt") #This text will describe the test summary(x) sink() How can I add that text above to the sink output? Thanks, Michael [[alternative HTML version deleted]]

Some comments: 1. sink() does not return a value. There is on point to set attr <- sink(...). Just give the command sink("C://....etc") 2. to complete the saving to the file you must give a second sink command with no argument: sink() So your code would be (pseudo-code, not actual code) sink( "filename" ) do something that prints output which will be captured by sink

Hi Eric,Thanks for the explanation. Is there a way to save the results automatically after the analysis gets over?. As I recently lost the results, because I didn't save the results. I don't want to run the sink or save command after the analysis is over rather run the command for saving the file before starting to run the analysis, so the file gets saved automatically after the script has

Hi Priya, You did not follow the logic of the pseudo-code. The sink("filename"), sink() pair captures whatever output is generated between the first sink statement and the second sink statement. You need (possibly) to do: sink("C://Users//Priya//Desktop//Attractor analysis_all genes//synaptogenesis//attr.txt") net <- loadNetwork("C://Users//Priya//Desktop//Attractor

Let's try a simple example. > # Create a script file of commands > # Note we must print the results of quantile explicitly > cat("x <- rnorm(50)\nprint(quantile(x))\nstem(x)\n", file="Test.R") > > # Test it by running it to the console > source("Test.R") 0% 25% 50% 75% 100% -2.4736219 -0.7915433

iterations <- 100 nvars <- 4 combined <- rbind(scaleMiceTrain, scaleMiceTest) reducedSample <- combined reducedSample <- subset(reducedSample, select = -pID50) reducedSample <- subset(reducedSample, select = -id) for (i in 1:iterations) { miceSample <- sample(combined[,-c(1,2)],nvars, replace=FALSE) miceSample$pID50 <- combined$pID50 miceTestSample <-

There is a package called 'safe' that produces an object which I can only write to a file using the sink() function. It works fine if the sink() command is not inside of a function, but it does not write anything to the file if the command is within a function. Sample code: # Using a matrix because as a simple example. dumpMatrix = function(mat) { sink(file = "mat.txt")

The attached file contains some simple functions that manipulate volatile varibles. The functions near the top of the file should turn into code that loads from x and then stores to it. The LLVM version on the web (not sure if it's the latest...) gets most of these wrong. John Regehr -------------- next part --------------

Hi David,Thank you for the example.When I try to use the cat function, I get an error cat(attr<-getAttractors(net, type="asynchronous"))Error in cat(attr <- getAttractors(net, type = "asynchronous")) : argument 1 (type 'pairlist') cannot be handled by 'cat' Please let me know, if I have used the function in right way?. Thank you Priya ?

Hi, how do I sink output to a subdirectory under which R is running? For example, suppose R is running in ~me and I would like to sink output to ~me/Subdir/filename. The obvious sink( "Subdir/filename" ) does not seem to work. Thanks very much.

Hello, I have implemented a method which uses sink to follow the progression status of an iterative process (Below is part of the code) I have already used such kind of code with no problem. Today, I get a "sink stack is full" error. I wonder if it could be linked with the fact that my .RData has a large size (around 7 Mo) ??? I hope that someone can help me ... Thanks in advance

Hi,I want the results to be saved automatically in a output text file after the script has finished running. I used the sink function in the following example, but the results file (output.txt) was empty. net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")# First I loaded theinput file for

Oftentimes I want to make outputs to be displayed on the R console. However, after I execute a program with a sink command in it the R console becomes unresponsive. Meaning that the following occurs in R console: > source("Program_containing_sink.R") > a<-1 > a > >sink() >a > R help says that sink() will bring output back to the console but i's not

hello, I have a problem running a R script actually I'm using source() and sink() and it doesn't work source("T:/agents/melyakhlifi/R/essai_rep.r") to execute a file and the file contain sink("T:/agents/melyakhlifi/R/sortie.html") cat("<html><body><pre>\n") matrix.merge2 cat("</pre></body></html>\n") sink() I

I used sink() a lot under linux with no problems. Under windows 2000 & using R 1.5.1, I do the following: - use sink() to direct ouput to a file - use sink() again to direct output to screen - print the file (to a network printer) PROBLEM: the file stays spooled infinitely at the printer. Sometimes the spooling gets translated into a printer error. The only way to get any printing working

Hey Richard, Could you share the following informations please? 1. gluster volume info <volname> 2. getfattr output of that file from all the bricks getfattr -d -e hex -m . <brickpath/filepath> 3. glustershd & glfsheal logs Regards, Karthik On Thu, Oct 26, 2017 at 10:21 AM, Amar Tumballi <atumball at redhat.com> wrote: > On a side note, try recently released health

Dear All R-helper, my question is how to use sink.number. if I want to label the output was sinked by sink function how should I do ? example: zz <- file("c:\\sinktest1.txt",open="wt") sink(zz) g<- 1:10 cat(g,"\n") f<-list(1:100) h<-capture.output(f) cat(h) sink() I want there are marks in "sinktest1.txt" files, let me know the number of

On a side note, try recently released health report tool, and see if it does diagnose any issues in setup. Currently you may have to run it in all the three machines. On 26-Oct-2017 6:50 AM, "Amar Tumballi" <atumball at redhat.com> wrote: > Thanks for this report. This week many of the developers are at Gluster > Summit in Prague, will be checking this and respond next

Hi Karthik, thanks for taking a look at this. I'm not working with gluster long enough to make heads or tails out of the logs. The logs are attached to this mail and here is the other information: # gluster volume info home Volume Name: home Type: Replicate Volume ID: fe6218ae-f46b-42b3-a467-5fc6a36ad48a Status: Started Snapshot Count: 1 Number of Bricks: 1 x 3 = 3 Transport-type: tcp