Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")#
First I loaded theinput file for which I want to identify attractors
attr <- sink("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//output.txt")# used the sink function to save the
results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the
script for identifying attractors
Is there any function to save the results before setting the script to run, so
that results are automatically saved in a text file after the script has
finished running?
Thank youPriya
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Some comments:
1. sink() does not return a value. There is on point to set attr <-
sink(...). Just give the command sink("C://....etc")
2. to complete the saving to the file you must give a second sink command
with no argument: sink()
So your code would be (pseudo-code, not actual code)
sink( "filename" )
do something that prints output which will be captured by sink
sink()
HTH,
Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <r-help at
r-project.org> wrote:
> Hi,I want the results to be saved automatically in a output text file
> after the script has finished running.
>
> I used the sink function in the following example, but the results file
> (output.txt) was empty.
>
> net <- loadNetwork("C://Users//Priya//Desktop//Attractor
analysis_all
>
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")#
> First I loaded theinput file for which I want to identify attractors
> attr <- sink("C://Users//Priya//Desktop//Attractor analysis_all
> genes//synaptogenesis//output.txt")# used the sink function to save
the
> results from attr function
>
> attr <- getAttractors(net, type="asynchronous")# then ran the
script for
> identifying attractors
> Is there any function to save the results before setting the script to
> run, so that results are automatically saved in a text file after the
> script has finished running?
>
> Thank youPriya
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
>
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Hi Eric,I tried as you suggested but I could not find the output in the text
file I created (attr.txt)
net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")sink("C://Users//Priya//Desktop//Attractor
analysis_all genes//synaptogenesis//attr.txt")
sink()
attr <- getAttractors(net, type="asynchronous")
?Priya
On Wednesday, 1 November 2017 6:54 PM, Eric Berger <ericjberger at
gmail.com> wrote:
Some comments:1. sink() does not return a value. There is on point to set attr
<- sink(...). Just give the command sink("C://....etc")2. to
complete the saving to the file you must give a second sink command with no
argument:? sink()So your code would be (pseudo-code, not actual code)
sink( "filename" )do something that prints output which will be
captured by sinksink()
HTH,Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <r-help at
r-project.org> wrote:
Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_ signaling_submodule3.txt")#
First I loaded theinput file for which I want to identify attractors
attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//output. txt")# used the sink function to save the
results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the
script for identifying attractors
Is there any function to save the results before setting the script to run, so
that results are automatically saved in a text file after the script has
finished running?
Thank youPriya
? ? ? ? [[alternative HTML version deleted]]
______________________________ ________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/ listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/ posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]