Hi Eric,I tried as you suggested but I could not find the output in the text
file I created (attr.txt)
net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")sink("C://Users//Priya//Desktop//Attractor
analysis_all genes//synaptogenesis//attr.txt")
sink()
attr <- getAttractors(net, type="asynchronous")
?Priya
On Wednesday, 1 November 2017 6:54 PM, Eric Berger <ericjberger at
gmail.com> wrote:
Some comments:1. sink() does not return a value. There is on point to set attr
<- sink(...). Just give the command sink("C://....etc")2. to
complete the saving to the file you must give a second sink command with no
argument:? sink()So your code would be (pseudo-code, not actual code)
sink( "filename" )do something that prints output which will be
captured by sinksink()
HTH,Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <r-help at
r-project.org> wrote:
Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_ signaling_submodule3.txt")#
First I loaded theinput file for which I want to identify attractors
attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//output. txt")# used the sink function to save the
results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the
script for identifying attractors
Is there any function to save the results before setting the script to run, so
that results are automatically saved in a text file after the script has
finished running?
Thank youPriya
? ? ? ? [[alternative HTML version deleted]]
______________________________ ________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/ listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/ posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]
Hi Priya,
You did not follow the logic of the pseudo-code.
The sink("filename"), sink() pair captures whatever output is
generated
between the first sink statement and the second sink statement.
You need (possibly) to do:
sink("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//attr.txt")
net <- loadNetwork("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")
attr <- getAttractors(net, type="asynchronous")
sink()
HTH,
Eric
On Wed, Nov 1, 2017 at 4:10 PM, Priya Arasu <galaxie2485 at yahoo.co.in>
wrote:
> Hi Eric,
> I tried as you suggested but I could not find the output in the text file
> I created (attr.txt)
>
> net <- loadNetwork("C://Users//Priya//Desktop//Attractor
analysis_all
genes//synaptogenesis//regulationof_dopamine_signaling_submodule3.txt")
>
> sink("C://Users//Priya//Desktop//Attractor analysis_all
genes//synaptogenesis//attr.txt")
>
>
> sink()
>
> attr <- getAttractors(net, type="asynchronous")
>
>
> Priya
>
>
> On Wednesday, 1 November 2017 6:54 PM, Eric Berger <ericjberger at
gmail.com>
> wrote:
>
>
> Some comments:
> 1. sink() does not return a value. There is on point to set attr <-
> sink(...). Just give the command sink("C://....etc")
> 2. to complete the saving to the file you must give a second sink command
> with no argument: sink()
> So your code would be (pseudo-code, not actual code)
>
> sink( "filename" )
> do something that prints output which will be captured by sink
> sink()
>
> HTH,
> Eric
>
>
>
> On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <
> r-help at r-project.org> wrote:
>
> Hi,I want the results to be saved automatically in a output text file
> after the script has finished running.
>
> I used the sink function in the following example, but the results file
> (output.txt) was empty.
>
> net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor
analysis_all
> genes//synaptogenesis// regulationof_dopamine_
signaling_submodule3.txt")#
> First I loaded theinput file for which I want to identify attractors
> attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
> genes//synaptogenesis//output. txt")# used the sink function to save
the
> results from attr function
>
> attr <- getAttractors(net, type="asynchronous")# then ran the
script for
> identifying attractors
> Is there any function to save the results before setting the script to
> run, so that results are automatically saved in a text file after the
> script has finished running?
>
> Thank youPriya
>
>
>
> [[alternative HTML version deleted]]
>
> ______________________________ ________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/ listinfo/r-help
> <https://stat.ethz.ch/mailman/listinfo/r-help>
> PLEASE do read the posting guide http://www.R-project.org/
> posting-guide.html <http://www.r-project.org/posting-guide.html>
> and provide commented, minimal, self-contained, reproducible code.
>
>
>
>
>
[[alternative HTML version deleted]]
Hi Eric,Thanks for the explanation. Is there a way to save the results
automatically after the analysis gets over?. As I recently lost the results,
because I didn't save the results. I don't want to run the sink or save
command after the analysis is over rather run the command for saving the file
before starting to run the analysis, so the file gets saved automatically after
the script has finished running
Priya
?
On Wednesday, 1 November 2017 7:53 PM, Eric Berger <ericjberger at
gmail.com> wrote:
Hi Priya,
You did not follow the logic of the pseudo-code.?The sink("filename"),
sink() pair captures whatever output is generated between the first sink
statement and the second sink statement.You need (possibly) to do:
sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//attr. txt")
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_
signaling_submodule3.txt")attr <- getAttractors(net,
type="asynchronous")
sink()
HTH,Eric
?
On Wed, Nov 1, 2017 at 4:10 PM, Priya Arasu <galaxie2485 at yahoo.co.in>
wrote:
Hi Eric,I tried as you suggested but I could not find the output in the text
file I created (attr.txt)
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_
signaling_submodule3.txt")sink("C://Users//Priya// Desktop//Attractor
analysis_all genes//synaptogenesis//attr. txt")
sink()
attr <- getAttractors(net, type="asynchronous")
?Priya
On Wednesday, 1 November 2017 6:54 PM, Eric Berger <ericjberger at
gmail.com> wrote:
Some comments:1. sink() does not return a value. There is on point to set attr
<- sink(...). Just give the command sink("C://....etc")2. to
complete the saving to the file you must give a second sink command with no
argument:? sink()So your code would be (pseudo-code, not actual code)
sink( "filename" )do something that prints output which will be
captured by sinksink()
HTH,Eric
On Wed, Nov 1, 2017 at 1:32 PM, Priya Arasu via R-help <r-help at
r-project.org> wrote:
Hi,I want the results to be saved automatically in a output text file after the
script has finished running.
I used the sink function in the following example, but the results file
(output.txt) was empty.
net <- loadNetwork("C://Users//Priya/ /Desktop//Attractor analysis_all
genes//synaptogenesis// regulationof_dopamine_ signaling_submodule3.txt")#
First I loaded theinput file for which I want to identify attractors
attr <- sink("C://Users//Priya// Desktop//Attractor analysis_all
genes//synaptogenesis//output. txt")# used the sink function to save the
results from attr function
attr <- getAttractors(net, type="asynchronous")# then ran the
script for identifying attractors
Is there any function to save the results before setting the script to run, so
that results are automatically saved in a text file after the script has
finished running?
Thank youPriya
? ? ? ? [[alternative HTML version deleted]]
______________________________ ________________
R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
https://stat.ethz.ch/mailman/ listinfo/r-help
PLEASE do read the posting guide http://www.R-project.org/ posting-guide.html
and provide commented, minimal, self-contained, reproducible code.
[[alternative HTML version deleted]]