search for: samr

I can't join a SAMBA3 domain from a W2K3 server. - Error message on the W2K3 server : "The parameter is incorrect" - Error message in the samba logs : rpc_parse/parse_samr.c:samr_io_userinfo_ctr(6479) samr_io_userinfo_ctr: unknown switch level 0x1a rpc_server/srv_samr.c:api_samr_set_userinfo(786) api_samr_set_userinfo: Unable to unmarshall SAMR_Q_SET_USERINFO. - Samba version : version 3.0.22 Samba Server role: ROLE_DOMAIN_PDC - winver of the W2K3 server : Ve...

I am trying to use a new (to me) package (samr) and even when I try to run a very simple example, I get this "cannot open the connection" error. The reason I am writing to r-help rather than to the authors of samr is I think this may be a more general R problem rather than a samr-specific problem. Perhaps something with my installat...

...r, I have a problem extracting the gene set I would like to work with. Here is I work with my data: normData <- read.delim("normalizedData.txt",sep ="\t") ######### two class unpaired comparison # y must take values 1,2 classes <- c(-1,-2,1,2) #prepere the data for the samr analysis data.x <-as.matrix(normData[,8:11]) d=list(x=data.x,y=classes, geneid=as.character(normData[,1]),genenames=as.character(normData[,1]), logged2=TRUE) samr.obj<-samr(d, resp.type="Two class paired", nperms=100) delta.table <- samr.compute.delta.table(samr.obj) d...

Hi R-help, I am trying to use 'samr' for 10 pre and post paired samples to test whether post is different from pre (i.e., the location shift for the delta of (post-pre)). However, I got an error message saying > samr.obj<-samr(d, resp.type="Two class paired", nperms=100, random.seed=100) perm= 1 Error in !log...

Hello Everybody, I am trying to perform SAM with the samr package. I am using the following code: sink ("R005") library(siggenes) library(samr) library(nnet) A <- as.matrix(read.table("D:\samrgenes1000.txt")) B <- as.matrix(read.table("D:\genenames1000.txt")) y1 <- c(rep(1,20),rep(2,6)) #there are 20 chips of one ki...

Hello list! I have a proble trying to perform a SAM analysis using the function samr from the samr package. I have put the option *center.arrays=TRUE *in order to scale all the experiments to median=0. I would like to retrieved the scaled data but it seems that samr does not return it...Does anyone have any idea on this? Thanks a lot!!! E. [[alternative HTML version deleted]]

...g the commands from a linux fileserver running samba3.0alpha18 to a samba3.0alpha18 PDC. The wbinfo -g returns all expected groups but the 'getent group' does not list the Domain Groups the level 2 error in the <server name>.log on the PDC is [2002/07/30 12:55:28, 2] rpc_server/srv_samr_nt.c:access_check_samr_function(112) _samr_query_groupmem: ACCESS DENIED (granted: 0000000000; required: 0x00000010) The level 3 error output is in the attached file. Has anybody else run across this problem? My nsswitch.conf on the winbindd file server contains passwd: files winbind s...

I'm running samr (Two class unpaired), but keep getting the following error: perm= 1 Error in if (logged2) { : argument is of length zero <code> library (impute) library (samr) data = list (x=dat, y=y, geneid = matrix(twoUnpaired.data[,1],ncol=1), genenames = matrix(twoUnpaired.data[,2], ncol=1)) samr...

Dear all, I'm using the samr-package to identify significantly differentially expressed genes in microarray data. So far, I had no problems, but when I used a large multiclass data set with 327 samples, I obtained the following error/warning message: Warning message: Inf In factorial(length(y)) : value out of range in 'ga...

Hi, here's my siggenes.table$genes.up snippet. Two class unpaired SAMR analysis. "Row" "Gene ID" "Gene Name" "Score(d)" "Numerator(r)" "Denominator(s+s0)" "Fold Change" "q-value(%)" "1" "25" "RPL15P22" "RPL15P22" "-1.44115338424578" "...

...saw, since some microsoft patch for AD, winbind client from samba 3.0.14 (and prior versions) does not work properly for getting users and groups from Active Directory. This problem was solved in 3.0.20. I saw the following text in the samba 3.0.20 changelog: "Disable schannel on the LSA and SAMR pipes in winbindd client code to deal with Windows 2003 SP1 and Windows 2000 SP4 SR1." I would like to know more about this. Does anybody know where I can found further information about this issue?. Is there any workaround to be able to keep using winbind from samba 3.0.14? The reason is th...

The behavior of the 'add user script' smb.conf option is rather weird: It is documented as an option to the login parts of the protocol, and used to add users dynamically during the logon process, if they don't exist locally. However, it is also used in the SAMR code when an admin explicitly creates a user. This is actually the more natural use for the parameter, but it is unnaturally shared between the two areas. This 'dual use' causes problems - unexpected users being created etc. However, this is nothing compared to its evil twin: 'del...

...b/pdb_ldap.c:524(init_sam_from_ldap) init_sam_from_ldap: Entry found for user: pc-dave$ [2016/02/28 07:29:41.421827, 3] ../source3/passdb/lookup_sid.c:1560(get_primary_group_sid) Forcing Primary Group to 'Domain Users' for pc-dave$ [2016/02/28 07:29:41.422496, 3] ../source3/rpc_server/samr/srv_samr_nt.c:2947(_samr_QueryUserInfo) User:[pc-dave$] [2016/02/28 07:29:41.422738, 3] ../source3/rpc_server/samr/srv_samr_nt.c:2947(_samr_QueryUserInfo) User:[pc-dave$] [2016/02/28 07:29:41.422862, 3] ../source3/rpc_server/samr/srv_samr_nt.c:2650(get_user_info_18) User:[pc-dave$] 0x80 [20...

Hey folks, the release of Samba 3.4.0pre1 will be delayed until April 30, 2009 due to the samr access check bugs and bug #6263 (Domain login problems in Windows XP without SP3). @Developers: There is still some space left to place your changes in the release notes. Karolin -- Samba http://www.samba.org SerNet http://www.sernet.de sambaXP http://www.sambaxp.org -------------- next...

...sids : S-1-5-21-1815787376-3445863923-1037607321-513 [2013/11/06 11:37:19.018502, 10] winbindd/winbindd_cache.c:2571(lookup_useraliases) lookup_usergroups: [Cached] - doing backend query for info for domain COM [2013/11/06 11:37:19.018532, 3] winbindd/winbindd_samr.c:1004(sam_lookup_useraliases) sam_lookup_useraliases [2013/11/06 11:37:19.018565, 5] rpc_server/rpc_ncacn_np.c:883(rpc_pipe_open_interface) Connecting to samr pipe. [2013/11/06 11:37:19.018595, 4] rpc_server/rpc_ncacn_np.c:132(make_internal_rpc_pipe_p) Create pipe requested \samr [2013/11/...

...ldap_get_single_attribute(358) smbldap_get_single_attribute: [sambaLogonHours] = [<does not exist>] [2006/12/14 17:46:09, 10] lib/smbldap.c:smbldap_get_single_attribute(358) smbldap_get_single_attribute: [modifyTimestamp] = [<does not exist>] [2006/12/14 17:46:09, 10] rpc_server/srv_samr_nt.c:load_sampwd_entries(367) load_sampwd_entries: allocating more memory [2006/12/14 17:46:09, 10] rpc_server/srv_samr_nt.c:load_sampwd_entries(380) load_sampwd_entries: entry: 0 [2006/12/14 17:46:09, 2] passdb/pdb_ldap.c:init_sam_from_ldap(499) init_sam_from_ldap: Entry found for user: nobo...

...25321 sambaAcctFlags: [W ] objectClass: sambaSamAccount objectClass: account The whole reason for this exercise is to establish a Single Sign On environment. I have the Linux side working well using PAM/NSS_LDAP. It seems that the relevant part of the log is as follows: api_rpcTNP: samr op 0x7 - api_rpcTNP: rpc command: SAMR_OPEN_DOMAIN [2003/08/20 22:29:32, 4] rpc_server/srv_lsa_hnd.c:find_policy_by_hnd_internal(162) Found policy hnd[0] [000] 00 00 00 00 04 00 00 00 00 00 00 00 BC 58 44 3F ........ .....XD? [010] F9 21 00 00 .!.. [200...

Dear list, I am trying to perform a significance analysis of a microarray experiment with survival data using the {samr} package. I have a matrix containing my data which has 17816 rows corresponding to genes, and 286 columns corresponding to samples. The name of this matrix is data.matrix2. Some of the first values of this matrix are: data.matrix2[1:3,1:5] GSM36777 GSM36778 GSM36779 GSM36780 GSM36781 [1,] 1.0...

We have posted a major new version 2.0 of the samr package for large scale significance testing, especially for gene expression data. This new version handles RNA-seq data, using the new method described in http://www-stat.stanford.edu/~tibs/ftp/Li_Tibs.pdf We have also added simple interface functions SAM and SAMseq. Comments (and bug reports)...

...source3/passdb/pdb_ldap.c: 524(init_sam_from_ldap) init_sam_from_ldap: Entry found for user: mbx-c14$ [2017/04/18 11:00:57.403331, 2] ../source3/passdb/pdb_ldap.c: 2310(init_group_from_ldap) init_group_from_ldap: Entry found for group: 515 [2017/04/18 11:00:57.403539, 3] ../source3/rpc_server/samr/ srv_samr_nt.c:2947(_samr_QueryUserInfo) User:[mbx-c14$] [2017/04/18 11:00:57.403605, 3] ../source3/rpc_server/samr/ srv_samr_nt.c:2947(_samr_QueryUserInfo) User:[mbx-c14$] [2017/04/18 11:00:57.403628, 3] ../source3/rpc_server/samr/ srv_samr_nt.c:2650(get_user_info_18) User:[mbx-c14$] 0x80...