search for: ruuid

Hi, I get an error indicating a missing library from the package 'Ruuid'. I suppose this means I should install RGtk. I just thought I'd document the error. Maybe a dependency entry is missing? R 2.9.0 OS X 10.5.8 Thanks, - chris > biocLite('Ruuid') Using R version 2.9.0, biocinstall version 2.4.12. Installing Bioconductor version 2.4 packages:...

Dear All, When installing the Ruuid package (from Bioconductor) from sources on my MAC (OS X 10.3.5, R version 2.0.0) I get the following errors: m00245:~ ivisser$ R CMD INSTALL -l /Users/ivisser/Library/R/library/ /Users/ivisser/Desktop/Ruuid * Installing *source* package 'Ruuid' ... loading cache ./config.cache checking f...

> source("http://www.bioconductor.org/biocLite.R") > biocLite(c("Ruuid")) Running getBioC version 0.1.6 with R version 2.3.1 Running biocinstall version 1.8.4 with R version 2.3.1 Your version of R requires version 1.8 of Bioconductor. trying URL 'http://bioconductor.org/packages/1.8/bioc/src/contrib/Ruuid_1.10.0.tar.gz' Content type 'application/x-g...

Hello ... I would like to direct people's attention to the package "Ruuid" on the Biconductor website (http://www.bioconductor.org/repository/devel/package/html/Ruuid.html). It's purpose is to generate UUID values, and has a simple R interface (currently one function: getuuid(), with multiple options). Under unix, it uses Theodore Ts'o's libuuid to cre...

...bvolumes shall be printed. This is necessary because this commit also adds all the so far missing items from the root_item like the received UUID, all generation values and all time values. The parameters to the "--fields" option is a list of items to print: --fields=gen,dirid,uuid,puuid,ruuid,cgen,ogen,sgen,rgen,ctime,otime, stime,rtime,path,rootid,parent,topid,all Signed-off-by: Stefan Behrens <sbehrens@giantdisaster.de> --- btrfs-list.c | 418 ++++++++++++++++++++++++++++++++++++------------------- btrfs-list.h | 40 +++++- cmds-subvolume.c | 57 +++----- man/btrfs...

...transcript: $ R --vanilla [[ Running on Debian Sarge ]] R : Copyright 2004, The R Foundation for Statistical Computing Version 2.0.1 (2004-11-15), ISBN 3-900051-07-0 [...] > library("sna") > library("graph") Loading required package: cluster Loading required package: Ruuid Creating a new generic function for "print" in "Ruuid" Loading required package: Biobase Loading required package: tools Welcome to Bioconductor Vignettes contain introductory material. To view, simply type: openVignette() For details on reading vi...

Hi How do I install "gregmisc" packages? I did- % sudo R > install.packages("gregmisc") . . > barplot2() but, Error: couldn't find function "barplot2" -- atuya Mac OSX 10.2.6 R 1.7.1

...cified will be attached before the current package, both when library is called and when saving an image or preparing for lazy-loading. I conclude that I need not require() a package that I've listed in Depends. However, this isn't always working for me. I have a package that has Ruuid in Depends. If I also have SaveImage: Yes, then R CMD check completes without error. However, if I omit SaveImage, then I get this: $ R CMD check graph WARNING: ignoring environment value of R_HOME * checking for working latex ... OK * using log directory * '/home/sfalcon...

...: > : R : Copyright 2004, The R Foundation for Statistical Computing > : Version 2.0.1 (2004-11-15), ISBN 3-900051-07-0 > : [...] > : > : > library("sna") > : > library("graph") > : Loading required package: cluster > : Loading required package: Ruuid > : Creating a new generic function for "print" in "Ruuid" > : Loading required package: Biobase > : Loading required package: tools > : Welcome to Bioconductor > : Vignettes contain introductory material. To view, > : simply type: openVign...

Dear r-helpers, Can anyone suggest a remedy to the following failure of Rgraphviz to load? > library(Rgraphviz) Loading required package: graph Loading required package: Ruuid Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/Library/Frameworks/R.framework/ Resources/library/Rgraphviz/libs/ppc/Rgraphviz.so': dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/ libs/ppc/Rgraphviz.so, 6): Library not loa...

Dear R-helpers, Can anyone tell me how to fix this: > library(Rgraphviz) Loading required package: graph Loading required package: Ruuid Error in dyn.load(x, as.logical(local), as.logical(now)) : unable to load shared library '/Library/Frameworks/R.framework/ Resources/library/Rgraphviz/libs/ppc/Rgraphviz.so': dlopen(/Library/Frameworks/R.framework/Resources/library/Rgraphviz/ libs/ppc/Rgraphviz.so, 6): Library not loa...

...hgu95av2 KEGG multtest xtable "1.11.9" "1.11.8" "0.99-8" "1.6.0" "1.4.1" "1.12.0" "1.8.1" "1.11.2" "1.3-2" RBGL annotate GO graph Ruuid limma genefilter survival rat2302 "1.8.1" "1.11.5" "1.6.5" "1.11.13" "1.11.2" "2.7.9" "1.11.8" "2.28" "1.12.0" affy affyio Biobase "1.11....

Is there any good source of information on how S4 classes (and methods) work from C? E.g., for reading how to read a slot value how to invoke a method how to test if you have an s4 object For writing, how to make a new instance of an S4 object. I've found scattered hints in the archive, including a link to a talk on this subject "I am using C code to create an S4 object based on

...s are in > C:\Documents and Settings\drnevich\Local >Settings\Temp\RtmpfRnlqb\downloaded_packages >updating HTML package descriptions > > > library(affycoretools) > >Loading required package: GOstats >Loading required package: graph >Loading required package: Ruuid >Loading required package: GO >Loading required package: annotate >Loading required package: RBGL >Loading required package: xtable > >Attaching package: 'xtable' > > > The following object(s) are masked from package:graph : > > label >...

I am trying to use a custom S4 object in my C code and I cannot get the access to its slots working. The following is a toy example, but even this crashes. In R I have: setClass("pd", representation(data="numeric")) x <- new("pd", data=1:5) test <- function(pd.obj) { res <- .C("TestFun", pd.obj) res} test(x) (Of couse

>I just installed bioconductor via getBioC.R but there >is 3 problems: apparently some libraries are missing >and I don't know which one, and even the XML package >add a error message like : >1:Installation of package Rgraphviz had non-zero exit >status in: installPkg(fileName, pkg, pkgVer, type, >lib, repEntry, versForce) >2:Installation of package rhdf5 had non-zero

Hi all, I am trying to create a unique identifier for each row, combining numbers from three columns. Do you know if there is a general formula to do this (or some manual where I can read about this)? I figure I can use the numeric entries of the columns as "coordinates" and multiply them with different coefficients (different magnitudes) to get the unique ID - but it would be nice to

Hi all, Today's apt-get update should bring the first R 2.4.0 snapshot packages. As with previous releases, I intend to renew the packages every week until the release of 2.4.0 by R Core that is scheduled for October 3. That way, R 2.3.1-3 will remain the version in testing. As you may have seen on the r-devel list, 2.4.0 will require that packages using S4 classes and the methods package

In some languages there is a function gensym() which returns a new unique name (in the current environment). This is quite helpful when one has to do temporary assignments. I could not find such a function in R. Is there one? -- Erich Neuwirth, Computer Supported Didactics Working Group Visit our SunSITE at http://sunsite.univie.ac.at Phone: +43-1-4277-38624 Fax: +43-1-4277-9386

...files, as well as functionality to create data packages out of these environments. * RBGL: A new package that provides an interface to the Boost libraries for graph manipulation. * Rgraphviz: A new package that provides an interface with Graphviz to plot graph objects in R. * Ruuid: A new package that provides Universally Unique ID values (UUIDs). * SAGElyzer: A new package that will store SAGE data in a database and then provide functionality to locate genes that are similar to a given SAGE tag. * tkWidgets: The importWizard functionality was added, which pro...