search for: rinit

...(cached) cc -E checking for /usr/include/unistd.h... (cached) yes creating ./config.status creating src/Makevars ** libs gcc -no-cpp-precomp -I/Library/Frameworks/R.framework/Resources/include -I/usr/local/include/glib12 -DHAVE_UNISTD_H=1 -I/sw/include -I/usr/local/include -fno-common -g -O2 -c Rinit.c -o Rinit.o In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:24:18: glib.h: No such file or directory In file included from Ruuid.h:5, from Rinit.c:1: uuidP.h:36: error: parse error before "guint32" uuidP.h:36: warning: no semicolon at end of str...

.../config.status config.status: creating src/Makevars ** libs gcc -I/package/R/2.3.1/lib/R/include -I/package/R/2.3.1/lib/R/include -I/usr/local/include -I/ usr/local/include/glib-2.0 -I/usr/local/lib/glib-2.0/include -DHAVE_UNISTD_H=1 -fPIC -O2 -D_F ILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE=1 -c Rinit.c -o Rinit.o In file included from /usr/local/include/glib-2.0/glib/galloca.h:30, from /usr/local/include/glib-2.0/glib.h:30, from uuidP.h:33, from Ruuid.h:5, from Rinit.c:1: /usr/local/include/glib-2.0/glib/gtypes.h:41: error:...

...clude -fpic -g -O2 -c envir.c -o envir.o gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -I/usr/local/include -fpic -g -O2 -c matchpt.c -o matchpt.o gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -I/usr/local/include -fpic -g -O2 -c Rinit.c -o Rinit.o gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -I/usr/local/include -fpic -g -O2 -c rowMedians.c -o rowMedians.o gcc -std=gnu99 -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include -I/usr/local/include -fpic -g -O2 -c sublist_extract.c -o subl...

Hi, Who should I ask about my package Rigroup_0.83 being moved to Archive status on CRAN and no longer available via install.package? I have no problems with the move if this was simply because of low demand. However, if there was a build issue with the newest releases that caused problems, I would be happy to address it. I'll just ask my students to install it from my own locally hosted

.../opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c Rbase64.c -o Rbase64.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c Rinit.c -o Rinit.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qfloat=nomaf:fenv -c Rmarkdown.c -o Rmarkdown.o /opt/ibm/xlC/13.1.6/bin/xlc_r -q64 -I/usr/local/lib64/R/include -DNDEBUG -I/usr/local/include -qpic -g -O2 -qstrict -qflo...

...IC:/PROGRA~1/Java/JDK15~1.0_0/include -IC:/PROGRA~1/Java/JDK15~1.0_0/include/win32 -IC:/etc/R/R-2.3.1/include gcc -c -o Rcallbacks.o Rcallbacks.c -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK15~1.0_0/include -IC:/PROGRA~1/Java/JDK15~1.0_0/include/win32 -IC:/etc/R/R-2.3.1/include gcc -c -o Rinit.o Rinit.c -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/etc/R/R-2.3.1/include Rinit.c: In function `initR': Rinit.c:265: warning: assignment from incompatible pointer type gcc -c -o globals.o globals.c -DWin32 -D_JNI_IMPLEMENTATION_ -IC:/PROGRA~1/Java/JDK15~1.0_0/include -IC:/PROGRA~1/Java/JDK15~1.0_0...

...callbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/local/Java/jre/../include -I/usr/local/Java/jre/../include/linux -fpic -I/usr/local/Java/jre/../include -I/usr/local/Java/jre/../include/linux -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/local/Java/jre/../include -I/usr/local/Java/jre/../include/linux -fpic -I/usr/local/lib64/R/include -I/usr/local/lib64/R/include gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g...

...0x0038c140 do_begin + 58 16 libR.dylib 0x0038b366 Rf_eval + 1182 17 libR.dylib 0x0038d9a6 Rf_applyClosure + 663 18 libR.dylib 0x0038b25d Rf_eval + 917 19 org.R-project.R 0x000189c3 run_REngineRmainloop + 569 (Rinit.m:442) 20 org.R-project.R 0x0001142a -[REngine runREPL] + 260 (REngine.m:181) 21 org.R-project.R 0x00002e91 main + 795 (main.m:126) 22 org.R-project.R 0x00002b5a _start + 216 23 org.R-project.R 0x00002a81 start + 41

...0x0038c140 do_begin + 58 16 libR.dylib 0x0038b366 Rf_eval + 1182 17 libR.dylib 0x0038d9a6 Rf_applyClosure + 663 18 libR.dylib 0x0038b25d Rf_eval + 917 19 org.R-project.R 0x000189c3 run_REngineRmainloop + 569 (Rinit.m:442) 20 org.R-project.R 0x0001142a -[REngine runREPL] + 260 (REngine.m:181) 21 org.R-project.R 0x00002e91 main + 795 (main.m:126) 22 org.R-project.R 0x00002b5a _start + 216 23 org.R-project.R 0x00002a81 start + 41

Hello, I am very new to R but my question is with respect to the C API for working with an embedded R console. I have been able to start and stop an embedded R console from within a C program as well as use the API to execute commands in it. I am seeking a mechanism to individually send native R commands to an embedded console and then consume the output of these commands. Specifically, I

...hare/R/include gcc -std=gnu99 -c -o Rcallbacks.o Rcallbacks.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O2 -pipe -g -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -fpic -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O2 -pipe -g -I/usr/lib/jvm/java-7-openjdk-amd64/jre/../include -fpic -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O2 -pipe -g -I/usr/lib/jvm/jav...

..._HAS_CSTACK -DRIF_HAS_RSIGHAND -O3 -g -std=gnu99 -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fPIC -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/lib/R/include gcc -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -O3 -g -std=gnu99 -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fPIC -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/lib/R/include gcc -c -o globals.o globals.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF...

...ize R with Rf_initialize_R() and use R_tryEval() to evaluate what you need (making sure you stay on the main thread). However, if you want to run the full event loop or even use the GUI elements then it gets more complicated - you can have a look at https://github.com/s-u/rJava/blob/master/jri/src/Rinit.c which is short enough to illustrate the entry points and purposes. If you are willing to use C++ then RInside is a nice package that wraps the R API in C++ classes for easier use: https://github.com/eddelbuettel/rinside simplifying it quite a bit. Cheers, Simon PS: this list is for the discuss...

I am subscribing to r-core because I am spending more and more time reading the R implementation itself, but in the meantime I would love to discuss the topic of embedding R (or linking against it) with more experienced C developers and people who've written C or C++ code for R packages. I have reached the stage where to make progress with embedding R in the target application, TIC-80 (see

...b/jvm/java-6-sun-1.6.0.12/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.12/jre/../include/linux -fpic -I/usr/lib/jvm/java-6-sun-1.6.0.12/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.12/jre/../include/linux -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o Rinit.o Rinit.c -g -Iinclude -DRIF_HAS_CSTACK -DRIF_HAS_RSIGHAND -g -O2 -I/usr/lib/jvm/java-6-sun-1.6.0.12/jre/../include -I/usr/lib/jvm/java-6-sun-1.6.0.12/jre/../include/linux -fpic -I/usr/share/R/include -I/usr/share/R/include -I/usr/share/R/include gcc -std=gnu99 -c -o globals.o globals.c -g -Iincl...

...0x936d2408 -[NSApplication sendEvent:] + 2944 5 org.R-project.R 0x0000b730 -[RController handleReadConsole:] + 88 (RController.m:869) 6 org.R-project.R 0x0002c0b8 Re_ReadConsole + 108 (Rcallbacks.m:137) 7 org.R-project.R 0x0003223c run_REngineRmainloop + 300 (Rinit.c:341) 8 org.R-project.R 0x0002aa1c -[REngine runREPL] + 68 (REngine.m:167) 9 org.R-project.R 0x0001d340 main + 680 (main.m:101) 10 org.R-project.R 0x00002e8c _start + 340 (crt.c:272) 11 org.R-project.R 0x00002d34 start + 60 Thread 1: 0 libSystem.B.d...

...ts:] + 104 (RController.m:1824) 46 org.R-project.R 0x0000b730 -[RController handleReadConsole:] + 88 (RController.m:869) 47 org.R-project.R 0x0002c0b8 Re_ReadConsole + 108 (Rcallbacks.m:137) 48 org.R-project.R 0x0003223c run_REngineRmainloop + 300 (Rinit.c:341) 49 org.R-project.R 0x0002aa1c -[REngine runREPL] + 68 (REngine.m:167) 50 org.R-project.R 0x0001d340 main + 680 (main.m:101) 51 org.R-project.R 0x00002e8c _start + 340 (crt.c:272) 52 org.R-project.R 0x00002d34 start + 60 Thr...