search for: rdiaz02

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2016 Mar 22
1
bzlib, pcre and zlib still needed in rules?
...ly, R-alpha_2016-03-21_r70361.tar.gz) I get a warning saying that those options are not recognized. Best, R. -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2017 Jan 17
0
postdoctoral position in Computational Biology/Statistics/Evolutionary Biology in Madrid, Spain
...gramming) and be interested in at least some of the areas dealt with in the project (evolutionary biology, statistics, computational biology). Procedure: - Given that the deadlines are extremely tight I'd suggest interested candidates to contact me directly (ramon.diaz at iib.uam.es or rdiaz02 at gmail.com) as soon as possible. Best, R. -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://lig...
2015 Dec 30
2
URW Fonts Description in Installation and Administration Manual
...g Ubuntu). Best, R. > > Both packages list URW fonts promimently in their Description: > > Dirk -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2013 Dec 28
1
make check fails with default libblas
...nfig=/usr/lib/tk8.5/tkConfig.sh make -j8 Is this a know problem? Am I doing something wrong? Best, R. -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2017 Jul 03
2
/etc/R/Renviron doesn't set R_LIBS_USER anymore
.... Best, R. > > Dirk > > | > | > | -Kirill > | > | > Dirk > | > > | -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2023 Dec 30
2
custom built R will not change BLAS/LAPACK with update-alternatives
...match the exact version in BioConductor devel and for a cluster where I am playing with some compiler options -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-31 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com r.diaz at uam.es ramon.diaz at iib.uam.es https://ligarto.org/rdiaz
2015 Dec 31
1
URW Fonts Description in Installation and Administration Manual
...sue is specific to Dario's setup... And mine might also be kind of strange :-). Oh well. > > Dirk -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2023 Dec 31
1
custom built R will not change BLAS/LAPACK with update-alternatives
On 30 December 2023 at 23:49, Ramon Diaz-Uriarte wrote: | All is good. (Just for the sake of curiosity, and if you have the time: why did you find those incantations suspicious?) Memory is fuzzy and no ECC in my wetware :) but as I seem to recall it had to do with my fears over filenames not being standardized enough / this interfering with the update-alternatives mechanism. May well have been
2015 Dec 30
2
URW Fonts Description in Installation and Administration Manual
Good day, In section A.2, the manual advises "Linux users will want the urw-fonts package". However, this package only seems to be available for RedHat Linux and Fedora Linux. What about for Debian or Ubuntu ? There is no urw-fonts package for them. Are there any other packages not mentioned that are important for these two distributions ? -------------------------------------- Dario
2007 Jan 05
5
eval(parse(text vs. get when accessing a function
Dear All, I've read Thomas Lumley's fortune "If the answer is parse() you should usually rethink the question.". But I am not sure it that also applies (and why) to other situations (Lumley's comment http://tolstoy.newcastle.edu.au/R/help/05/02/12204.html was in reply to accessing a list). Suppose I have similarly called functions, except for a postfix. E.g. f.1 <-
2017 Jul 03
1
/etc/R/Renviron doesn't set R_LIBS_USER anymore
...And local policy can (and should!) still be to set a local group. > Point taken too. Best, R. > Dirk -- Ramon Diaz-Uriarte Department of Biochemistry, Lab B-25 Facultad de Medicina Universidad Aut?noma de Madrid Arzobispo Morcillo, 4 28029 Madrid Spain Phone: +34-91-497-2412 Email: rdiaz02 at gmail.com ramon.diaz at iib.uam.es http://ligarto.org/rdiaz
2007 Apr 07
2
Rserve and R to R communication
Dear All, The "clients.txt" file of the latest Rserve package, by Simon Urbanek, says, regarding its R client, "(...) a simple R client, i.e. it allows you to connect to Rserve from R itself. It is very simple and limited, because Rserve was not primarily meant for R-to-R communication (there are better ways to do that), but it is useful for quick interactive connection to an
2017 Jul 02
3
/etc/R/Renviron doesn't set R_LIBS_USER anymore
On 02.07.2017 22:01, Dirk Eddelbuettel wrote: > On 2 July 2017 at 21:39, Kirill M?ller wrote: > | Hi > | > | An upgrade to R 3.4.1 on Ubuntu removed the default setting of > | R_LIBS_USER in /etc/R/Renviron. What's the rationale behind this? Thanks. > > Pretty much exactly what I told you in person last week :) > > - idea is to prefer /usr/local/lib/R/site-library/
2009 Jun 24
5
algoritmo en aov para diseño no balanceado
Hola, ¿Alguien sabe cómo lidia la función aov con diseño no balanceado? ¿Utiliza el las funciones de suma de cuadrados type II ? Gracias!! [[alternative HTML version deleted]]
2010 Nov 02
8
Una guía de estilo para programar en R... ¿comentarios?
Hola, ¿qué tal? Hace poco vi que Google había hecho pública su guía de estilo interna para programar en R: http://google-styleguide.googlecode.com/svn/trunk/google-r-style.html Me tomé la libertad de traducirla: http://datanalytics.com/guia_estilo_r.html Cuanto más pienso en ella, más carencias veo. Escribí sobre ello en mi blog (
2009 Nov 27
0
multicore: defunct R processes left
Dear All, At least in three different GNU/Linux systems, the parallel function from the multicore package leaves defunct (zombie) R processes. For instance library(multicore) parallel(1:5) collect() After collect, the child process (with pid as given by collect) is left defunct. (If we run the last two lines of code again, the previously defunct process will be replaced by the new defunct
2010 Oct 11
0
OT: snow socket clusters with VirtualBox and VMware player (Linux host, Win guest)
Dear All, I am trying to create socket clusters (using snow and snowfall) with a Windows OS. I am running Windows inside VirtualBox and VMware player (i.e., Windows is guest) from a Debian Linux host system (I've tried in two different Linux systems, an AMD x86-64 workstation and an Intel i686 laptop). However, almost always seting up the cluster fails: either R will hang forever or I will
2008 Apr 26
1
returning vectors of unknown size from C (with .C)
Dear All, In a package, I am using ".C" to call some C functions. In one case, the number of elements of the return vectors are not known in R before the C call. (Two of the vectors are integers, the third is vector of character strings). Passing from R a vector of the maximum possible size would be a huge waste. I understand one alternative is to use ".Call", but I'd
2008 Mar 05
1
R_alloc with structures with "flexible array members"
Dear All, In a package, I want to use some C code where I am using a structure (as the basic element of a linked list) with flexible array members. Basically, this is a structure where the last component is an incomplete array type (e.g., Harbison & Steel, "C, a reference manual, 5th ed.", p. 159) such as: struct Sequence { struct Sequence *next; int len; unsigned int
2010 Feb 12
1
validate (rms package) using step instead of fastbw
Dear All, For logistic regression models: is it possible to use validate (rms package) to compute bias-corrected AUC, but have variable selection with AIC use step (or stepAIC, from MASS), instead of fastbw? More details: I've been using the validate function (in the rms package, by Frank Harrell) to obtain, among other things, bootstrap bias-corrected estimates of the AUC, when variable