search for: r_ld_library_path

...ript file which is /Applications/StartR.app/RAqua.app/Contents/MacOS/R in order to have /usr/bin as the first path entry in the DYLD_LIBRARY_PATH environment variable. For example transform this piece of script from if test -z "${DYLD_LIBRARY_PATH}"; then DYLD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" else<br> DYLD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}:${DYLD_LIBRARY_PATH}" fi export DYLD_LIBRARY_PATH<br> into the following one if test -z "${DYLD_LIBRARY_PATH}"; then DYLD_LIBRARY_PATH="${R_LD_LIBRARY_PATH}" else DYLD_LIBRARY_PATH="${R...

Dear R-help, I had a problem running a Perl script on AIX inside pipe() or system(). The Perl script was not finding some modules when run from within R. The sysadmin tracked it down to a problem with R_LD_LIBRARY_PATH in the installed /usr/local/bin/R script: original: : ${R_LD_LIBRARY_PATH=${R_HOME}/bin:/opt/freeware/lib:/usr/local/lib:/opt/free ware/lib:/usr/local/lib:/opt/freeware/lib:/usr/local/lib:${R_HOME}/bin} new: : ${R_LD_LIBRARY_PATH=${R_HOME}/bin:/usr/local/lib:/opt/freeware/lib:/usr/loca l/lib:/opt...

...b) Removing this dual inscripted *${* ${ }*}* obviously solves the limitation encountered during the configure step (below) ## Export LD_LIBRARY_PATH or equivalent. if eval "test -z \"\*${*${Rshlibpath_var}*}*\""; then eval "${Rshlibpath_var}=\"${R_LD_LIBRARY_PATH}\"" else eval "${Rshlibpath_var}=\"${R_LD_LIBRARY_PATH}${PATH_SEPARATOR}\${${Rshlibpath_var}}\"" fi *And offers a clean pre-compilation result as*: R is now configured for x86_64-pc-none Source directory: . Installation di...

Hello! I'm trying to install R-3.0.1 on an Ubuntu machine (64 bit, version 13.04). I have uninstalled and installed several times, but to no avail. I keep getting errors about missing ldpaths, and installing packages does not work at all. Here is the information: erin@erin-Lenovo-IdeaPad-Y480:~$ sudo apt-get install r-base Reading package lists... Done Building dependency tree Reading

Hello, I'm trying to compile R-3.3.3 or R-3.4.0 on a RHEL6 system that I've prefixed the latest headers down a shared utility path, I've sourced this path in LD_LIBRARY_LATH, R_LD_LIBRARY_PATH, and dropping the headers down /src/include which appears to be the default R_include_dir but it will not accept these any other place than /usr/include. Is there a way to properly define a prefixed includedir and libdir for R that I'm missing? I was able to do this in 3.2.4-revised successf...

Full_Name: Lukasz Andrzej Bartnik Version: 2.8.1 OS: RHELS 5.2 Submission from: (NULL) (194.181.94.250) Compile R for 32 bit on a 64 bit machine: unset LD_LIBRARY_PATH unset R_LD_LIBRARY_PATH export CC="gcc -m32" export CXXFLAGS="-m32 -O2 -g" export FFLAGS="-m32 -O2 -g" export FCFLAGS="-m32 -O2 -g" export OBJCFLAGS="-m32 -O2 -g" export LIBnn=lib ./configure --with-x=no --enable-R-shlib --prefix=/prefix Now try to install a package whic...

Using R-2.8.0 and R-2.8.1, I get behaviour like this: R version 2.8.0 (2008-10-20) Copyright (C) 2008 The R Foundation for Statistical Computing ISBN 3-900051-07-0 [....] > Sys.getenv("LD_LIBRARY_PATH") LD_LIBRARY_PATH

...preciated. There's a big difference between installing, updating and maintaining R (what I do a systems/application administrator) and using R for statistical analysis. IMSL is included in our global library path. I created a copy of the R startup script and added the IMSL library path to the R_LD_LIBRARY_PATH. Ran ldd on R.bin to see if any dependencies were not found. Is there something available in R that can do what the IMSL drnnor (double precision random number generator) function does? Again, any light you can shed on this would be GREATLY appreciated! Nynese Tinsley, BSEE, MSCIS Unix Systems...

...admin, section B7). Martyn On Thu, 2017-04-27 at 14:41 +0000, Jones, Michael wrote: > Hello, > > I'm trying to compile R-3.3.3 or R-3.4.0 on a RHEL6 system that I've > prefixed the latest headers down a shared utility path, I've sourced > this path in LD_LIBRARY_LATH, R_LD_LIBRARY_PATH,??and dropping the > headers down /src/include which appears to be the default > R_include_dir but it will not accept these any other place than > /usr/include.??Is there a way to properly define a prefixed > includedir and libdir for R that I'm missing???I was able to do this >...

...: $ LD_LIBRARY_PATH=/usr/lib/atlas octave2.1 -q octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t ans = 7.9600 $ edd at homebud:~> octave2.1 -q octave2.1:1> X=randn(1000,1000);t=cputime();Y=X'*X;cputime-t ans = 61.520 For R version 1.3.0-4, the R_LD_LIBRARY_PATH variable has to be used, and its value needs to be copied out of /usr/bin/R (or edited therein). For R version 1.3.1 or later this is done automatically in the R startup shell script. For an Athlon machine, and with the explicit definition which is no longer needed as of R 1.3.1, the example becom...

.... It found gcc with no problem. when I typed "make", the necessary functions and files seemed to be made. When "R" is typed(in any directory), the message is always "Fatal error: Probably no X11 support: the shared library was not found" I changed the variable "R_LD_LIBRARY_PATH" in the script file "R" to "/usr/people/guest/R-1.1.0/src/include", since that is where the packages are. The same error message appeared. The same happens if any options are added, such as "R -g=none" or "R --help". The X11 directory is in "/bin...

Greetings, We are trying to compile a 64bit version of R (1.7.0) on HP-UX (11.11), but are running into some problems. The following relevant filesets are installed: B3901BA B.11.11.04 HP C/ANSI C Developer's Bundle for HP-UX 11.i (S800) B3909DB B.11.11.60 HP Fortran 90 Compiler and associated products (S800) B3913DB C.03.33.01 HP aC++ Compiler (S800) This is our configure step:

Dear list, I have a lot of troubles installing Rgraphviz. I installed graphviz 2.13 from "graphviz-2.13.20061222.0540.tar" I installed the library Rgraphviz > getBioC("Rgraphviz") Running biocinstall version 2.0.8 with R version 2.5.0 Your version of R requires version 2.0 of Bioconductor. trying URL '

Has anyone succeeded in compiling R-1.1.0 on a Digital (Compaq) Alpha running OSF4.0F (or E)? Everything seems to compile OK (except the frequent "Warning: Unresolved:" at link time - this threw me off the scent for a while!), but then at run time I get: Fatal error: The X11 shared library could not be loaded. The error was dlopen: cannot load

NO Hi. I'm not sure if this is an R-help or R-devel problem, so I'm starting here in the hope that someone can help (and willing to go to the other list if it's more appropriate). I think I am following all of the instructions in the various manuals, but clearly I am missing something. I have an Intel EM64T Dell with 2 dual-core Xeon processors running Red Hat EL5. I would

...ADLINE_LIBS='' RLAPACK_LDFLAGS='' RMATH_HAVE_EXPM1='' RMATH_HAVE_LOG1P='' RMATH_HAVE_WORKING_LOG1P='' R_ARCH='' R_BATCHSAVE='' R_BROWSER='/usr/bin/open' R_DEFS='' R_GZIPCMD='//bin/gzip' R_JAVA_LD_LIBRARY_PATH='' R_LD_LIBRARY_PATH='' R_MODULES='' R_OS='linux-gnu' R_OSTYPE='unix' R_PAPERSIZE='letter' R_PDFVIEWER='/usr/bin/open' R_PLATFORM='x86_64-unknown-linux-gnu' R_PRINTCMD='' R_PROFILING='' R_RD4DVI='ae' R_RD4PDF='times,hyper' R_UNZIPCM...

...he C99 double complex type is now required. The C99 complex trigonometric functions (such as csin) are not currently required (FreeBSD lacks most of them): substitutes are used if they are missing. ? The C99 system call va_copy is now required. ? If environment variable R_LD_LIBRARY_PATH is set during configuration (for example in config.site) it is used unchanged in file etc/ldpaths rather than being appended to. ? configure looks for support for OpenMP and if found compiles R with appropriate flags and also makes them available for use in packages: se...

...he C99 double complex type is now required. The C99 complex trigonometric functions (such as csin) are not currently required (FreeBSD lacks most of them): substitutes are used if they are missing. ? The C99 system call va_copy is now required. ? If environment variable R_LD_LIBRARY_PATH is set during configuration (for example in config.site) it is used unchanged in file etc/ldpaths rather than being appended to. ? configure looks for support for OpenMP and if found compiles R with appropriate flags and also makes them available for use in packages: se...

...or unless --with-recommended-packages=no (or equivalent) is used. o Configuring without having the X11 headers and libraries is now an error unless --with-x=no (or equivalent) is used. o Configure tries harder to find a minimal set of FLIBS. Under some circumstances this may remove from R_LD_LIBRARY_PATH path elements that ought to have specified in LDFLAGS (but were not). o The C code for most of the graphics device drivers and their afm files are now in package grDevices. o R is now linked against ncurses/termlib/termcap only if readline is specified (now the default) and that requi...

...or unless --with-recommended-packages=no (or equivalent) is used. o Configuring without having the X11 headers and libraries is now an error unless --with-x=no (or equivalent) is used. o Configure tries harder to find a minimal set of FLIBS. Under some circumstances this may remove from R_LD_LIBRARY_PATH path elements that ought to have specified in LDFLAGS (but were not). o The C code for most of the graphics device drivers and their afm files are now in package grDevices. o R is now linked against ncurses/termlib/termcap only if readline is specified (now the default) and that requi...