search for: prho

..../../../R-1.1.1/src/library/ctest/src/kendall.c -o kendall.o gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R-1.1.1/src/library/ctest/src/ks.c -o ks.o gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R-1.1.1/src/library/ctest/src/prho.c -o prho.o gcc -I../../../../include -I/usr/local/include -fPIC -g -O2 -c ../../../../../R-1.1.1/src/library/ctest/src/swilk.c -o swilk.o gcc -shared -fPIC -o ctest.sl ansari.o fexact.o kendall.o ks.o prho.o swilk.o -L/usr/local/lib -lg2c -lm -L/lib/pa1.1 -L/usr/lib/pa1.1 -u main -L/usr/lo...

Dear R developers: There is a possible bug in calculating the p-value for Spearman's rank correlation. Line 155 in file R-patched/src/library/stats/R/cor.test.R is as.double(round(q) + lower.tail), I think, it should be as.double(round(q) + 2*lower.tail), The reason is that round(q) is expected to be an even number (the S statistic), so the next feasible value is round(q)+2.

...0, p-value < 2.2e-16 alternative hypothesis: true rho is greater than 0 sample estimates: rho 1 > 1 / factorial(10) [1] 2.755732e-07 Since we have perfect rank correlation and only one permutation out of 10! could give this for N = 10, the p-value should be 1/10!. Reading the code in prho.c, it appears that the "exact" calculation uses the Edgeworth approximation for N > 9. This makes sense because, for similar examples with N <= 9, the results are as expected (1 / N!). The "exact" p-value calculation is good enough for most practical purposes, but is cle...

...package `base' ../../../library/base/R/base is unchanged building package `ctest' ../../../library/ctest/R/ctest is unchanged f90 -c alnorm.f -o alnorm.o alnorm.f external function ALNORM 53 Lines Compiled ld -b -o ctest.sl alnorm.o ansari.o fexact.o kendall.o ks.o prho.o swilk.o /opt/fortran90/lib/libF90.a -lcl /opt/fortran90/lib/libisamstub.a ld: DP relative code in file alnorm.o - shared library must be position independent. Use +z or +Z to recompile. *** Error exit code 1 Thanks, Marcus... -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-...

...unts/devel/SUNWspro/prod/include -c portsrc.f -o portsrc.o cc -xtarget=generic64 -G -L/mounts/devel/SUNWspro/lib/amd64 -L/usr/sfw/lib/amd64 -L/mounts/devel/GNU/repoz/readline43/lib/amd64 -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sbart.o sgram.o sinerp.o sslvrg.o stxwx.o hclust.o kmns.o...

...m missing something to link. Before I spend my time hunting it down, maybe someone has an immediate idea. gs. == my output: make[4]: Entering directory `//local.src/R-1.0.0/src/library/ctest/src' gcc -shared -Xlsharedlibrary -Xlexpall -o ctest.so alnorm.o ansari.o fexact.o kendall.o ks.o prho.o swilk.o -L/usr/lib/gcc-lib/powerpc-apple-machten4/2.8.1 -lg2c -lm ansari.o: In function `errmsg': ansari.c:13: undefined reference to `Rf_error' ansari.o: In function `w_init': ansari.c:21: undefined reference to `R_chk_calloc' ... ansari.c:84: undefined reference to `Rf_choose...

...lude/mysql: fichier d'entr?e d'?dition de liens n'est pas utilis? parce l'?dition de lien n'a pas ?t? faite making ks.d from ks.c gcc: /usr/include/mysql: fichier d'entr?e d'?dition de liens n'est pas utilis? parce l'?dition de lien n'a pas ?t? faite making prho.d from prho.c gcc: /usr/include/mysql: fichier d'entr?e d'?dition de liens n'est pas utilis? parce l'?dition de lien n'a pas ?t? faite making swilk.d from swilk.c gcc: /usr/include/mysql: fichier d'entr?e d'?dition de liens n'est pas utilis? parce l'?dition de...

...). Does anybody have tips for compiling the latest version of R so that I can avoid these errors? configure make ... ... ... f90: CODE: 0 WORDS, DATA: 0 WORDS gcc -G -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisq sim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth .o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nl s.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o si nerp.o sslvrg.o stxwx.o hclust.o kmn...

...FFLAGS="-m64" LDFLAGS="-m64 -L/usr/local/packages/gcc-3.2/lib/sparcv9" ./configure --prefix=/usr/local/packages/R-1.5.1-64bit runs OK, however one of the tests (I assume it is a test anyway) fails thus gcc3 -G -o ctest.so ansari.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o prho.o swilk.o init.o -L/usr/lib/sparcv9 -L/usr/local/packages/gcc-3.2/lib/sparcv9 -L/usr/local/packages/gcc-3.2/lib/gcc-lib/sparc-sun-solaris2.8/3.2/sparcv9 -L/usr/local/packages/gcc-3.2/lib/gcc-lib/sparc-sun-solaris2.8/3.2 -L/usr/ccs/bin/sparcv9 -L/usr/ccs/bin -L/usr/ccs/lib/sparcv9 -L/usr/ccs/lib -L...

...gt; cc1: warning: changing search order for system directory "/usr/local/include" cc1: warning: as it has already been specified as a non-system directory gcc -bundle -flat_namespace -undefined suppress -L/usr/local/lib -o ctest.so ansari.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o prho.o swilk.o init.o -L/usr/local/lib -L/opt/local/lib/gcc-lib/powerpc-apple-darwin6.2/3.1 -L/opt/local/lib/gcc-lib/powerpc-apple-darwin6.2/3.1/../../.. -lreadline -ldl -lncurses -lm -lfrtbegin -lg2c -lSystem ../../../../library/ctest/libs/ctest.so is unchanged building package 'eda' ../.....

...sewhere pulled into to the archive. c) one example - stats.so currently the command to make stats.so is: gcc -Wl,-bnoquiet -std=gnu99 -shared -Wl,-brtl -Wl,-G -Wl,-bexpall -Wl,-bnoentry -o stats.so init.o kmeans.o ansari.o bandwidth s.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o monoSpl.o isoreg.o Srunmed.o d blcen.o distance.o hclust-utils.o nls.o rWishart.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o fa mily.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o lm.o complete_cases.o cov.o deriv.o fft.o fouri...

...report the progress of my attempts to get R running on HP-UX with gcc: Firstly, I could work around the PIC problem by leaving out all the lib stuff (I rebuilt gcc with --enable-share, but this (alone) did not help), e.g. the line gcc -shared -fPIC -o ctest.sl ansari.o fexact.o kendall.o ks.o prho.o swilk.o -L/usr/local/lib -lg2c -lm -L/lib/pa1.1 -L/usr/lib/pa1.1 -u main -L/usr/local/qt/lib -L/opt/gcc/lib/gcc-lib/hppa1.1-hp-hpux10.20/2.95.2 -L/usr/ccs/bin -L/usr/ccs/lib -L/opt/gcc/lib -lm was replaced by gcc -shared -fPIC -o ctest.sl ansari.o fexact.o kendall.o ks.o prho.o swilk.o -u...

On 2015-10-15 15:02, Prof Brian Ripley wrote: > On 15/10/2015 13:32, Michael Felt wrote: >> Hi. >> >> Just wanted to let you know I am getting close to packaging R for AIX in rephrase - would like to be active in keeping R binaries current for AIX. My interest in not in R per se (rather a colleague who has a project that uses R, so I hope to assist him, and others like him).

...onfigure step is uneventful, the tail end of make follows. Does anyone have any experience with that? Thanks a lot in advance for any suggestions. gcc -std=gnu99 -shared -L/usr/local/lib -o stats.so init.o kmeans.o ansari.o bandwidths.o chisqsim.o d2x2xk.o fexact.o kendall.o ks.o line.o smooth.o prho.o swilk.o ksmooth.o loessc.o isoreg.o Srunmed.o Trunmed.o dblcen.o distance.o hclust-utils.o nls.o HoltWinters.o PPsum.o arima.o burg.o filter.o mAR.o pacf.o starma.o port.o family.o sbart.o approx.o loglin.o lowess.o massdist.o splines.o bsplvd.o bvalue.o bvalus.o loessf.o ppr.o qsbart.o sgram.o s...

...than via the ## simple normal approximation. ## In the case of no ties, S = (1-rho) * (n^3-n)/6. pspearman <- function(q, n, lower.tail = TRUE) { if(n <= 1290) # n*(n^2 - 1) does not overflow .C("prho", as.integer(n), as.double(q + 1), p = double(1), integer(1), as.logical(lower.tail), PACKAGE = "stats")$p...

...+0100 +++ R-cor.test/src/library/stats/R/cor.test.R 2009-03-05 10:39:07.383841736 +0100 @@ -151,9 +151,9 @@ pspearman <- function(q, n, lower.tail = TRUE) { if(n <= 1290 && exact) # n*(n^2 - 1) does not overflow .C("prho", as.integer(n), - as.double(round(q) + lower.tail), + as.double(round(q) + 2*lower.tail), p = double(1L), integer(1L), as.logical...

...## simple normal approximation. > ## In the case of no ties, S = (1-rho) * (n^3-n)/6. > pspearman <- function(q, n, lower.tail = TRUE) { > if(n <= 1290) # n*(n^2 - 1) does not overflow > .C("prho", > as.integer(n), > as.double(q + 1), > p = double(1), > integer(1), > as.logical(lower.tail), > PACKAGE = "stats&...

Good day everyone, I want to use the Gram-Charlier series expansion to model some data. To do that, I need functions to: 1) Calculate 'n' moments from given data 2) Transform 'n' moments to 'n' central moments, or 3) Transform 'n' moments to 'n' cumulants 4) Calculate a number of Hermite polynomials Are there R-functions to do any of the above?

Dear R-Help friends, I am unable to get the latest version of R (2.4.1) to compile on my solaris 10 system - has anybody else experienced this problem and are you able to offer me any advice? I appreciate your time, many thanks, Jenny Barnes Here are my CURRENT specifications: platform sparc-sun-solaris2.10 arch sparc os solaris2.10

...than via the ## simple normal approximation. ## In the case of no ties, S = (1-rho) * (n^3-n)/6. pspearman <- function(q, n, lower.tail = TRUE) { if(n <= 1290) # n*(n^2 - 1) does not overflow .C("prho", as.integer(n), as.double(q + 1), p = double(1), integer(1), as.logical(lower.tail), PACKAGE = "stats")$p...