search for: netcdfs

Hi I used the command R CMD INSTALL ncdf to install ncdf package in linux. Can somebody explain to me what might be wrong. Thanks. Below is the error. * Installing *source* package 'ncdf' ... Special note: checking for gcc... gcc checking for C compiler default output... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for

Having trouble with netCDF since I upgraded to 1.2.1 (did directly from 1.1.1). Package was recompiled after the upgrade. Symptoms: open.netCDF returns cleanly, but read.netCDF causes R to segfault and dump core. What else do you need me to write to help? --please do not edit the information below-- Version: platform = i586-pc-linux-gnu arch = i586 os = linux-gnu system = i586, linux-gnu

Greetings. I am attempting to add NetCDF libraries within R, and have failed. We have R version 2.8, and are running on a 64-bit Redhat Linux 2.6.18 kernel: Red Hat Enterprise Linux Client release 5.2 (Tikanga) Linux halfmoon.ncdc.noaa.gov 2.6.18-92.1.22.el5 #1 SMP Fri Dec 5 09:28:22 EST 2008 x86_64 x86_64 x86_64 GNU/Linux I have run the installation instructions found at

Greetings all, I recently tried to install RNetCDF from within R (install.packages) on Fedora Core 8 (with netcdf 3.6.2 and netcdf-devel 3.6.2 already installed). This resulted in an error because the netcdf header files are installed in /usr/include/netcdf-3 rather than /usr/include which is where RNetCDF looks for them. This problem was described in a 2006 post (see below), but no

I imagine this "where are your header files" problem comes up in other packages, so I'm asking this as a general R question. How should configure scripts be re-written so they look in more places? Briefly, the problem is that Fedora-Extras installs the header files in a subdirectory /usr/include/netcdf-3 rather than /usr/include: # rpm -ql netcdf-devel /usr/include/netcdf-3

Hello, I have been having difficulties opening netcdf files using the netcdf library. I am able to successfully open the file and I can determine the names and size. However, when I try to read it I receive an error. Reading the documentation, I am wondering if this might be due to a difference between netcdf version 2 and more recent netcdf format? I've tried using different values for the

Hi All, I am trying to install ncdf package on a Linux 64-bit machine. I successfully installed netcdf using this command, ./configure --prefix=/home/challar/netcdf/ --disable-netcdf4 I then tried to install ncdf package in R R CMD INSTALL --configure-args="-with-netcdf_incdir=/home/challar/netcdf/include -with-netcdf_libdir=/home/challar/netcdf/lib" ncdf_1.6.3.tar.gz I get this

summary: I can successfully ncvar_put(...) data to a file, but when I try to ncvar_get(...) the same data, I get > Error in if (nc$var[[li]]$hasAddOffset) addOffset = nc$var[[li]]$addOffset else addOffset = 0 : > argument is of length zero How to fix or debug? details: R code @ https://github.com/TomRoche/GEIA_to_NetCDF successfully (if crudely) uses R packages={ncdf4, maps, fields}

I am looking for a package to read and write NetCDF files. NetCDF package says it can only read, not write. Another package for the standard binary file format? Daehyok Shin

Thomas, I'm using your package netCDF. Thanks for making it and for leave it available for public use. It took me a little while installing it, as my netcdf library is libnetcdf.a (not libnetcdf) and my library directory is not /usr/local/lib. Finally, I was able to install with the following: 1. ln -s libnet.a libnet (in my usr/local/netcdf-3.5.0/lib directory) 2. R CMD INSTALL

Dear all, I would like to use data in .netcdf format and for those I have to use the netCDF or ncdf packages. Problem : these packages don't seem to work : "Error in testRversion(descfields) : This package has not been installed properly See the Note in ?library" (with netCDF package) Does anybody have the same problems with these packages ? Is there any

Buenas tardes, gracias a ambos por su ayuda, conseguí con éxito finalmente instalar ambos paquetes y abrir el netcdf de versión 4 desde RStudio. Mi consulta al siguiente paso, después de buscar sobre el tema es, como creo que no es posible realizar la transformación de netCDF-4 a netCDF-3, ¿es posible guardar con raster ese archivo .nc que pude abrir en R y ya llevarlo al SIG? Para ello he

On a Red Hat Linux cluster I am seeing the following after multiple other packages were successfully installed. The error seems to suggest that RNetCDF.o was not copied to the appropriate lib folder. The admin user performing the install has the required privileges to perform the install. Words of wisdom are greatly appreciated: R CMD INSTALL

Has anyone experimented with the Network Common Data Format (netcdf) described at http://www.unidata.ucar.edu/packages/netcdf for archiving data? Is this format widely used outside of atmospheric research? -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-devel mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info",

Wanting a commandline solution (for a problem detailed @ http://mailman.unidata.ucar.edu/mailing_lists/archives/netcdfgroup/2012/msg00279.html ) I turned to Rscript, and whacked out the q'n'd https://github.com/TomRoche/GEIA_to_netCDF/blob/master/netCDF.stats.to.stdout.r However it wasn't as quick as hoped, because I spent quite a bit of time figuring out how to pass the arguments.

Hi, I am using the package ncdf to create netCDF files and I want to mimic the the header of an exiting netCDF file created outside of R. Below is what the existing header looks like (part of it that is different): netcdf ccd1984_05_08 { dimensions: lat = 1974 ; lon = 1894 ; time = UNLIMITED ; // (1 currently) variables: int time(time) ;

Hello, I'm trying to install ncdf4 on RHEL 5.8, R version 2.15.1. Previously installed is netcdf 3.6.2 from Red Hat, so I've compiled and installed netcdf 4.2.1.1 (with hdf5 and zlib as per install instructions, and also set --enable-netcdf4 option) into /usr/local. When attempting to install ncdf4 it is failing with: ** testing if installed package can be loaded Error in

I was trying to install software named ncview on a centos 5.3 box. ./configure command gave this error: Error, the X libraries and development headers must be installed for ncview to work! I was surprised that there were many google hits related to ubuntu, none for centos. So even though I eventually figured out what to do, I decided to share this with the list anyhow, so maybe next time I

Hello R-Group, I am new working with netcdf files and the raster package in R.I am trying to read in a netcdf file using the package "ncdf".I am able to get the lat, lon and parameter I need and can plot using fill.contour.Ultimately, I am trying to create a .asc file to reafd into GIS.I am using the package "raster" to read the parameter.When I read in with

Can someone help me out with a "small" problem? I've started using netcdf files recently, and I want to extract the grid id and also the coordinates from a HIRHAM netcdf file. I know how to extract a slice of dataset both in space and in time and I also know the area that this file should cover, however I have no idea regarding the reference for both LAT/LON and RLAT/RLON. I tried