search for: mutat

Hello, everybody. We are working on a tool for mutation testing. The work is still in progress and far away from being done. However, we have got some results already. And we would like to share them with you. But, let me give you a brief introduction first. ### Mutation Testing In a nutshell, Mutation Testing is a way to evaluate a quality of a te...

Good Afternoon, My name is Gabriel, I'm doing an analysis if there is increase or decrease in dependence on the mutated genes, using 3 or more genes using the fisher exact test.I performed with success an analysis for two genes using fisher.test( ). example of the 2x2 contigency table: Gene A mutated | Gene A normalGene B mutated| 26 | 12...

...2012-10-05 ", " 2012-10-17 " ), class = "factor"), raw = structure(c(9L, 12L, 16L, 13L, 10L, 7L, 6L, 3L, 2L, 4L, 14L, 15L, 1L, 5L, 8L, 11L), .Label = c(" ... If patient KRAS result is wild type, they will start Erbitux. ... (Several lines of material) ... Ordered KRAS mutation test 11/11/2011. Results are still not available. ... ", " ... KRAS (mutated). Therefore did not prescribe Erbitux. ... ", " ... KRAS (mutated). Will not prescribe Erbitux due to mutation. ... ", " ... KRAS (Wild). ...", " ... KRAS results are in. Patie...

...using code like: names(KRASyn)[grep("muta", names(KRASyn))] The idea then would be to add together the various columns using code like: KRASyn$Mutant_comb <- rowSums(KRASyn[grep("muta", names(KRASyn))]) What I discovered though, is that this selects columns like "nonmutated" and "unmutated" as well as columns like "mutated", "mutation", and "mutational". So I'd like to know how to select columns that have some variation of the word "mutant" without the "non" or the "un". I've been lo...

Hi R Helpers, I have been looking for an example of how to execute different dplyr mutate statements on the same dataframe in a single step. I show how to do what I want to do by going from df0 to df1 to df2 to df3 by applying a mutate statement to each dataframe in sequence, but I would like to know if there is a way to execute this in a single step; so simply go from df0 to df1 whil...

?s 22:50 de 17/10/2024, Sparks, John escreveu: > Hi R Helpers, > > I have been looking for an example of how to execute different dplyr mutate statements on the same dataframe in a single step. I show how to do what I want to do by going from df0 to df1 to df2 to df3 by applying a mutate statement to each dataframe in sequence, but I would like to know if there is a way to execute this in a single step; so simply go from df0 to df1 whil...

...; 2011-03-01 ", " 2011-03-14 ", " 2011-10-10 ", " 2011-10-24 ", " 2012-09-15 ", " 2012-10-05 ", " 2012-10-17 " ), class = "factor"), raw = c(" ordered kras testing on 10102010 results not yet available if patient has a mutation will start erbitux ", " received kras results on 10202010 test results indicate tumor is wild type ua protein positve erpr positive her2neu positve ", " will conduct kras mutation testing prior to initiation of therapy with erbitux ", " still need to order kras m...

Hi all, It has been a year or so since I have run this code to plot temporal activity. It was working now I am getting an error related to MUTATE. Error in UseMethod("mutate") : ? no applicable method for 'mutate' applied to an object of class "character" Any help/suggestions welcomed. Tnx to all the R code gurus out there. R v 4.4.0 Bat Dude The saved code I used is below.? Perhaps a package has changed sin...

Dear R-Users, Did anyone follow more closely the SARS Cov-2 lineages? I have done a quick check of Cov-2 mutations on the list downloaded from NCBI (see GitHub page below); but it seems that the list contains the cumulative mutations only for B.1 => B.1.1, but not after the B.1.1 branch: # B.1 => B.1.1 seems cumulative diff.lineage("B.1.1", "B.1", data=z) # but B.1.1 => B.1.1....

...cript: attach(ipumsi_00008_dta) library(tinytex) library(dplyr) library(ggplot2) library(tidyr) library(knitr) library(forcats) library(mice) library(pander) library(ggcorrplot) library(lubridate) # true/false code when sploc is greater than zero and sprule is equal to 1 or 2 ipumsi_00008_dta <- mutate(ipumsi_00008_dta, rule_union = sploc>0 & (sprule==1 | sprule==2)) ## creating numeric code for rule_union & rule_unionn: 1 when sploc is greater than zero and sprule is equal to 1 or 2, 0 if not. ## This is neccesary because otherwise it is a logical code and we cannot multiply with it,...

Hello - does anyone know whether there are any packages for Mann-Kendall mutation tests in R available? The only one I could find online is this MK_mut_test: Mann-Kendall mutation test in Sibada/sibadaR: Sibada's accumulated R scripts for next probably use to avoid reinventing the wheel. (rdrr.io) <https://rdrr.io/github/Sibada/sibadaR/man/MK_mut_test.html> but the...

Hello, Why are ValueSymbolTable's mutators all private? I can't seem to find a way to add a symbol to the table without using one of them. It looks like a bug to me since there is no way to use it otherwise. --Sam

...----- Original Message ---- > From: Chris Lattner <clattner at apple.com> > To: Samuel Crow <samuraileumas at yahoo.com> > Cc: LLVM Developers Mailing List <llvmdev at cs.uiuc.edu> > Sent: Fri, July 9, 2010 3:03:50 PM > Subject: Re: [LLVMdev] ValueSymbolTable's mutators are private? > > > On Jul 9, 2010, at 12:02 PM, Samuel Crow wrote: > > > Hello, > > > > Why are ValueSymbolTable's mutators all private? I can't seem to find a way >to > > > add a symbol to the table without using one of them. It looks...

Hi all, It has been a year or so since I have run this code to plot temporal activity. It was working now I am getting an error related to MUTATE. Error in UseMethod("mutate") : ? no applicable method for 'mutate' applied to an object of class "character" Any help/suggestions welcomed. Tnx to all the R code gurus out there. R v 4.4.0 Bat Dude The saved code I used is below.? Perhaps a package has changed sin...

On Jul 9, 2010, at 12:02 PM, Samuel Crow wrote: > Hello, > > Why are ValueSymbolTable's mutators all private? I can't seem to find a way to > add a symbol to the table without using one of them. It looks like a bug to me > since there is no way to use it otherwise. The mutators are things like Value::setName() -Chris

...eplace=TRUE) # X <- split(sample(1:10000, sum(No_of_X), replace=TRUE), rep(ID.Path, No_of_X)) Y <- lapply(X,function(x) sample(x, round(runif(1, min=10, max=50)))) X and Y are both lists, and I've made the following function to work on that data as part of a simulation I'm building: Mutate<-function(x){ l<-0 for(i in x){ l2<-0 l<-l+1 for(i in x[[l]]){ l2<-l2+1 if(runif(1) < 0.9) ifelse(runif(1) <0.5, x[[l]][l2] <- x[[l]][l2]+1, x[[l]][l2] <- x[[l]][l2]-1) } } return(x) } I call this with Effectors<-Mutate(X) The func...

Am I being "thick" here .. mutate(data, *# text Is interpretated as mutate (data, * The star is the character... (Data is the line above being piped) Why have the comments been *'d?. Is that the source error or a posting error here? On Tue, 17 Dec 2024, 14:57 Ivan Krylov via R-help, <r-help at r-project.org> wrote:...

...t;neotropical.bats at gmail.com> ?????: > fname <- "Buzz.txt" > All<- fname I think the code needs a call to read.table() or another function to read your data here. 'All' is still a string containing the name of the file, not its contents. > All %>% > mutate(*#convert Date from chr to Date* This call expects 'All' to contain a data.frame-like object, not a file name. HTML-based bold text doesn't work on this mailing list, so to make it easier for other people to copy & paste executable code from your messages, I would recommend compo...

In R scripts (as opposed to packages), even in reproducible scripts, it seems fairly conventional to use the global workspace as a sort of main function, and thus R scripts often populate the global environment with many variables, which may be mutated. Although this makes sense given R has historically been used interactively and this practice is common for scripting languages, this appears to disagree with the software-engineering principle of avoiding a mutating global state. Although this is just a rule of thumb, in R scripts, the frequent...

...uesta está > separada por ",". > > Así está > > [image: image.png] > > Hago esto para poder separar en columnas las distintas respuestas: > > > > > > *mult_bas_dat<-mult_bas_dat %>%  separate_rows(bases, sep = ",") %>% > mutate(basedatos = str_squish(bases)) %>%  select(basedatos)* > ## múltiple a columnas ## > > > > > > *mult_bas_dat_final<-mult_bas_dat %>%  separate_rows(basedatos, sep = ",") > %>%  mutate(basedatos = str_squish(basedatos), # Para quitar los espacios &...