search for: mutat

Hello, everybody. We are working on a tool for mutation testing. The work is still in progress and far away from being done. However, we have got some results already. And we would like to share them with you. But, let me give you a brief introduction first. ### Mutation Testing In a nutshell, Mutation Testing is a way to evaluate a quality of a te...

Good Afternoon, My name is Gabriel, I'm doing an analysis if there is increase or decrease in dependence on the mutated genes, using 3 or more genes using the fisher exact test.I performed with success an analysis for two genes using fisher.test( ). example of the 2x2 contigency table: Gene A mutated | Gene A normalGene B mutated| 26 | 12...

...2012-10-05 ", " 2012-10-17 " ), class = "factor"), raw = structure(c(9L, 12L, 16L, 13L, 10L, 7L, 6L, 3L, 2L, 4L, 14L, 15L, 1L, 5L, 8L, 11L), .Label = c(" ... If patient KRAS result is wild type, they will start Erbitux. ... (Several lines of material) ... Ordered KRAS mutation test 11/11/2011. Results are still not available. ... ", " ... KRAS (mutated). Therefore did not prescribe Erbitux. ... ", " ... KRAS (mutated). Will not prescribe Erbitux due to mutation. ... ", " ... KRAS (Wild). ...", " ... KRAS results are in. Patie...

...using code like: names(KRASyn)[grep("muta", names(KRASyn))] The idea then would be to add together the various columns using code like: KRASyn$Mutant_comb <- rowSums(KRASyn[grep("muta", names(KRASyn))]) What I discovered though, is that this selects columns like "nonmutated" and "unmutated" as well as columns like "mutated", "mutation", and "mutational". So I'd like to know how to select columns that have some variation of the word "mutant" without the "non" or the "un". I've been lo...

...; 2011-03-01 ", " 2011-03-14 ", " 2011-10-10 ", " 2011-10-24 ", " 2012-09-15 ", " 2012-10-05 ", " 2012-10-17 " ), class = "factor"), raw = c(" ordered kras testing on 10102010 results not yet available if patient has a mutation will start erbitux ", " received kras results on 10202010 test results indicate tumor is wild type ua protein positve erpr positive her2neu positve ", " will conduct kras mutation testing prior to initiation of therapy with erbitux ", " still need to order kras m...

Dear R-Users, Did anyone follow more closely the SARS Cov-2 lineages? I have done a quick check of Cov-2 mutations on the list downloaded from NCBI (see GitHub page below); but it seems that the list contains the cumulative mutations only for B.1 => B.1.1, but not after the B.1.1 branch: # B.1 => B.1.1 seems cumulative diff.lineage("B.1.1", "B.1", data=z) # but B.1.1 => B.1.1....

...cript: attach(ipumsi_00008_dta) library(tinytex) library(dplyr) library(ggplot2) library(tidyr) library(knitr) library(forcats) library(mice) library(pander) library(ggcorrplot) library(lubridate) # true/false code when sploc is greater than zero and sprule is equal to 1 or 2 ipumsi_00008_dta <- mutate(ipumsi_00008_dta, rule_union = sploc>0 & (sprule==1 | sprule==2)) ## creating numeric code for rule_union & rule_unionn: 1 when sploc is greater than zero and sprule is equal to 1 or 2, 0 if not. ## This is neccesary because otherwise it is a logical code and we cannot multiply with it,...

Hello - does anyone know whether there are any packages for Mann-Kendall mutation tests in R available? The only one I could find online is this MK_mut_test: Mann-Kendall mutation test in Sibada/sibadaR: Sibada's accumulated R scripts for next probably use to avoid reinventing the wheel. (rdrr.io) <https://rdrr.io/github/Sibada/sibadaR/man/MK_mut_test.html> but the...

Hello, Why are ValueSymbolTable's mutators all private? I can't seem to find a way to add a symbol to the table without using one of them. It looks like a bug to me since there is no way to use it otherwise. --Sam

...----- Original Message ---- > From: Chris Lattner <clattner at apple.com> > To: Samuel Crow <samuraileumas at yahoo.com> > Cc: LLVM Developers Mailing List <llvmdev at cs.uiuc.edu> > Sent: Fri, July 9, 2010 3:03:50 PM > Subject: Re: [LLVMdev] ValueSymbolTable's mutators are private? > > > On Jul 9, 2010, at 12:02 PM, Samuel Crow wrote: > > > Hello, > > > > Why are ValueSymbolTable's mutators all private? I can't seem to find a way >to > > > add a symbol to the table without using one of them. It looks...

On Jul 9, 2010, at 12:02 PM, Samuel Crow wrote: > Hello, > > Why are ValueSymbolTable's mutators all private? I can't seem to find a way to > add a symbol to the table without using one of them. It looks like a bug to me > since there is no way to use it otherwise. The mutators are things like Value::setName() -Chris

...eplace=TRUE) # X <- split(sample(1:10000, sum(No_of_X), replace=TRUE), rep(ID.Path, No_of_X)) Y <- lapply(X,function(x) sample(x, round(runif(1, min=10, max=50)))) X and Y are both lists, and I've made the following function to work on that data as part of a simulation I'm building: Mutate<-function(x){ l<-0 for(i in x){ l2<-0 l<-l+1 for(i in x[[l]]){ l2<-l2+1 if(runif(1) < 0.9) ifelse(runif(1) <0.5, x[[l]][l2] <- x[[l]][l2]+1, x[[l]][l2] <- x[[l]][l2]-1) } } return(x) } I call this with Effectors<-Mutate(X) The func...

In R scripts (as opposed to packages), even in reproducible scripts, it seems fairly conventional to use the global workspace as a sort of main function, and thus R scripts often populate the global environment with many variables, which may be mutated. Although this makes sense given R has historically been used interactively and this practice is common for scripting languages, this appears to disagree with the software-engineering principle of avoiding a mutating global state. Although this is just a rule of thumb, in R scripts, the frequent...

...uesta está > separada por ",". > > Así está > > [image: image.png] > > Hago esto para poder separar en columnas las distintas respuestas: > > > > > > *mult_bas_dat<-mult_bas_dat %>%  separate_rows(bases, sep = ",") %>% > mutate(basedatos = str_squish(bases)) %>%  select(basedatos)* > ## múltiple a columnas ## > > > > > > *mult_bas_dat_final<-mult_bas_dat %>%  separate_rows(basedatos, sep = ",") > %>%  mutate(basedatos = str_squish(basedatos), # Para quitar los espacios &...

I ran into an interesting issue today with ActiveRecord''s becomes method and discovered that it is mutating the receiver without me knowing it. The API docs<http://api.rubyonrails.org/classes/ActiveRecord/Persistence.html#method-i-becomes>say "The new instance will share a link to the same attributes as the original > class. So any change to the attributes in either instance will af...

...b`, from which @ does not suffer). Would this extension require that function authors explicitly enable auto-quoting support? I somewhat envisioned functions seeing the resolved unquoted object (within their calling scope) so that they could retain their standard defintions when not using @. In my mutate example, mutate itself could simply be the NSE version, so mutate(mtcars, z = mpg) would work as normal, but x = "mpg" mutate(mtcars, z = @x) would produce the same result (x may be changing within a loop or be defined through a formal argument). Here, @x would resolve to...

Function has its own FunctionType* member as well as a Type* member that it inherits from GlobalValue. The latter can be mutated but not the former, leading to potential strange inconsistencies. While I realize using mutateType is probably going to trigger a bunch of "you're doing it wrong" replies, it seems like mutateType, as a necessary evil, should be virtual and do the right wrong thing for Functions to...

Hi, I am looking for genetic optimization package that allow to define my own chromosome solution and crossover/mutation opoerations. I checked genoud and genopt, not with much effort of 'cause, with no luck. Any one can shed some light on this? thanks.

Dear ladies and gentlemen, I have recently installed the latest version of R (4.3.3) for windows. Now I have the following problems with mutated vowels like ?, ?, etc. Here is an example: If I type the command: Dir <- "C/Users/macho/Documents/_LVn/Experimentelle ?bungen" in the R console there is no problem. However, if I put the same command into a source file (e.g. Test.r) and call this file from R (via the source command),...

Dear mailing list, I'm stuck with a tricky problem here - at least it seems tricky to me, being not really talented in pattern matching and regex matters. I'm analysing amino acid mutations by position and type of mutation. E.g. (fictitious example) in position 92, I can find L92V, L92MV, L92I... L is in this example the wild-type amino-acid, and everything behind the position number is a mutation (single amino acid or mixture). I'm only interested in the mutation information,...