search for: librlapack

Hi! I am trying to compile R-1.8.1 on an alphaserver running Tru64 Unix. I use the compilers cc,cxx and f77. After the compilation I try: make check and get the following message: Make: Cannot open /share/make/vars.mk. Stop. Does anyone have any suggestions on why? Regards Arne Gjuvsland

...devNull.o devPicTeX.o devPS.o devQuartz.o init.o -lm Error in solve.default(rgb) : lapack routines cannot be loaded In addition: Warning message: unable to load shared library '/cineca/prod/Bioinf/R-2.4.1/modules//lapack.so': rtld: 0712-001 Symbol _xldipow/cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so was referenced from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition of the symbol was not found. rtld: 0712-001 Symbol _log was referenced from module /cineca/prod/Bioinf/R-2.4.1/lib/libRlapack.so(), but a runtime definition of the symbol...

...+ code for an R library. I'm getting the report (see below), but can't track down the uninitialised value(s). I tried using --track-origins=yes in valgrind which gives: ==28258== Uninitialised value was created by a stack allocation ==28258== at 0xEE33D98: ??? (in /usr/lib64/R/lib/libRlapack.so) I presume the problem is an uninitialised value being used in my code, rather than in libRlapack, but there is a better way of tracking down where it is? Cheers, Jarrod > R -d "valgrind --tool=memcheck --leak-check=full --track-origins=yes" ==28258== Conditional jump or mo...

Whenever I try to load the Matrix package, I get the following error message: libRlapack.so: cannot open shared object file: No such file or directory A file with that name is indeed not on the hard disk. I am using the R version which comes with Ubuntu Hardy Heron LTS. Here is the output of R.Version(): R.Version() $platform [1] "i486-pc-linux-gnu" $arch [1] "i486&qu...

Hi All I just installed R 3.1 on fedora 20 after removing rstudio # rpm -q R R-3.1.0-5.fc20.x86_64 after I removed rstudio (I don't use it that much but need it for teaching) I tried to reinstall rstudio but its missing libRblas.so and libRlapack.so dependencies I'm guessed it would be OK to force it because lapack-devel and blas-devel are installed so I tried # rpm -ivh --no-deps rstudio-0.98.507-x86_64.rpm but I'm not sure this is OK because rstudio seems to be dead although I suspect thats a different problem - eg in terminal...

...es and got hung up when Matrix couldn't be lazy loaded. The actual error follows: > library(Matrix) Loading required package: lattice Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/usr/local/lib/R/site-library/Matrix/libs/Matrix.so': libRlapack.so: cannot open shared object file: No such file or directory Error: package/namespace load failed for 'Matrix' > I googled a bit, and found some related bug reports, but I can't understand them. Any suggestions? Could this be related to switching to the optimized atlas libraries,...

...bjects/__init__.py", > line 12, in <module> import rpy2.rinterface as rinterface > File > "/usr/local/lib64/python2.7/site-packages/rpy2/rinterface/__init__.py", > line 66, in <module> from rpy2.rinterface.rinterface import * > ImportError: /usr/lib64/R/lib/libRlapack.so: undefined symbol: > _gfortran_concat_string ---------------------- So there are difficulties with lapack/fortran libs. An older version of apparently the same error can be found here: http://www.mail-archive.com/animov at faunalia.it/msg00311.html Another user reported the following: -...

...reference to `dqrsl_' earth.c:(.text+0x1d99): undefined reference to `dtrsl_' earth.c includes: extern _C_ int dqrdc2_(... extern _C_ int dqrsl_(... extern _C_ void dtrsl_(.. extern _C_ void daxpy_(... extern _C_ double ddot_(... I'm linking against libRblas.so and libRlapack.so so I did "nm libRblas.so libRlapack.so" and found that there were no symbols for dqrdc2_, dqrsl_, dqrsl_ and dtrsl_. The functions are declared in "R_ext/Applic.h" and implemented in separate f77 files. I find that libR.a appears to contain the symbols but there is no libR....

...ull.o devPicTeX.o devPS.o devQuartz.o init.o mkdir ../../../../library/grDevices/libs Warning in solve.default(rgb) : unable to load shared library '/export/admin-home/nikser/R-2.8.1/modules//lapack.so': ld.so.1: R: fatal: relocation error: file /export/admin-home/nikser/R-2.8.1/lib/libRlapack.so: symbol __vlog_: referenced symbol not found Error in solve.default(rgb) : lapack routines cannot be loaded Error: unable to load R code in package 'grDevices' Execution halted *** Error code 1 The following command caused the error: echo "tools:::makeLazyLoading(\"grDevices\&...

R developers, I am trying to understand how symbols are resolved, so that I can configure a package that I contributed to, and so that I can provide guidance to (linux / OSX) users of the package. To be concrete, my package uses the LAPACK Fortran symbol zsysv. This is not in libRlapack, but is defined on my system in the library /usr/lib64/liblapack.so. * I suspect that the reason the symbol is not in libRlapack is just one of economy, i.e., no use for the symbol in R routines, rather than for other nefarious reasons (?? some fundamental incompatibility with R?) I guess t...

...ibrary, whatever I install it from within R or with apt-get, it claims a problem: > library(Matrix) > Loading required package: lattice > Error in dyn.load(file, DLLpath = DLLpath, ...) : > unable to load shared library '/usr/lib/R/site-library/Matrix/libs/Matrix.so': > libRlapack.so: cannot open shared object file: No such file or directory > Error: package/namespace load failed for 'Matrix' but there is a file Natrix.so in this directory (but no libRlapack.so) Do you see where the problem is? Was I right to update R in this manner? Thanks! Matthieu

...trying to compile R-2.1.1 on MacOSX 10.3.9, but the make is failing (I am building it without all the aqua stuff): ./configure --enable-R-shlib --with-lapac make .... Snip ..... gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.framework/Versions/2.1.1/Resources/lib/libRlapack.dyli b -o libRlapack.dylib dlamc.lo dlapack0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo cmplxblas.lo -L/sw/lib/gcc/powerpc-apple-darwin7.9.0/3.4 -lg2c -lSystem ld: Undefined symbols: _dasum_ _daxpy_ _dcopy_ _ddot_ _dgemm_ _dgemv_ _dger_ _dnrm2_ _drot_ _dscal_ _dswap_ _dsymv_ _dsyrk_ _dtbsv_ _...

...puter was equipped with these:- ---cpu amd64 2 cores ---o/s cblfs 64-bit only linux kernel-2.6.32 gcc-4.4.2 jdk(1.5)-6U20? ---bls atlas3.9.26 lapacck-3.2.1 I obtained an installed directory of ~58Mbytes and in the ~/lib directory was libR.so (~7.8Mbytes in size) as well as libRblas.so and libRlapack.so (~2.9Mbytes). I have since upgraded atlas to atlas3.9.32 and lapack to lapack-3.2.2. to fulfill requirements of other numeric intensive programs I use. Today I compiled and installed R-2.12.0 using the same settings used for R-2.11.1 and these are my findings:- {The installed dir...

...Darwin 7.3.0) Submission from: (NULL) (129.173.23.36) R-1.9.0 will not compile on Apple OSX (Darwin kernel 7.3.0). The error msg starts as follows, and has several more errors. gcc -dynamiclib -L/sw/lib -L/usr/local/lib -install_name /Library/Frameworks/R.f ramework/Versions/1.9.0/Resources/bin/libRlapack.dylib -o libRlapack.dylib dlapa ck0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -L/sw/lib -L/usr/local/lib -L/sw/lib/gcc/powerpc-apple-darwin7.2.0/3.4 -L/sw/lib/gcc/powe rpc-apple-darwin7.2.0/3.4/../../.. -lfrtbegin -lg2c -lSystem ld: common symbols not allowed with MH_DYLIB...

...-robustbase' and its setup or (missing?) dependencies. I can confirm Agustin's problem, working on Ubuntu 8.04.2 (8.04 is a "LTS" = long time support version). apt-get install r-cran-robustbase works fine, but when trying to load the package, there's a DLL - dependency on libRlapack.so which is not fulfilled (and not fulfillable: There's *no* libRlapack.so). For me, $ /usr/bin/R CMD config LAPACK_LIBS -llapack and lapack.so is found inside /usr/lib/R/modules/ and liblapack.so from the 'lapack3' Debian/Ubuntu package is simply in /usr/lib/libpack.so Cou...

...clue. I've recently upgraded a G4 to OS 10.2.5 and I thought I would have another go at installing R from source, after failing to accomplish this in 10.1. So with 1.7.0 from CRAN configure seems to be fine, but make dies with the following gcc -dynamiclib -install_name /usr/local/lib/R/bin/libRlapack.dylib -L/sw/lib -L/usr/local/lib -o libRlapack.dylib dlapack0.lo dlapack1.lo dlapack2.lo dlapack3.lo cmplx.lo -lf77blas -latlas -L/sw/lib -L/usr/local/lib -L/sw/lib/gcc-lib/powerpc-apple-darwin6.5/3.1 -L/sw/lib/gcc-lib/powerpc-apple-darwin6.5/3.1/../../.. -lfrtbegin -lg2c -lSystem ld: common symbo...

...able to load shared object '/Library/Frameworks/R.framework/Versions/3.2/Resources/library/igraph/libs/igraph.so': dlopen(/Library/Frameworks/R.framework/Versions/3.2/Resources/library/igraph/libs/igraph.so, 6): Library not loaded: /Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libRlapack.dylib Referenced from: /Library/Frameworks/R.framework/Versions/3.2/Resources/library/igraph/libs/igraph.so Reason: Incompatible library version: igraph.so requires version 3.4.0 or later, but libRlapack.dylib provides version 3.2.0 In addition: Warning message: package ?igraph? was built under...

Hello, After upgrading to 2.7.2 this morning via the cran repository, I get the following error when calling R via the command line: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to restore saved data in .RData Has anyone else had this issue? Any solutions? Joshua Stumpf Eastern Michigan University [[alternative HTML version deleted]]

...ll -DUSE_R_ALLOC -DC ALL_FROM_R -c utilsR.c -o utilsR.o ar cr knncat.a *.o ranlib knncat.a windres --include-dir c:/R/rw1081/src/include -i knncat_res.rc -o knncat_res.o gcc --shared -s -o knncat.dll knncat.def knncat.a knncat_res.o -Lc:/R/rw1081/ src/gnuwin32 c:/R/rw1081/src/modules/lapack/libRlapack.a -lRblas -lg2c -lg2c -lR gcc.exe: c:/R/rw1081/src/modules/lapack/libRlapack.a: No such file or directory make[2]: *** [knncat.dll] Error 1 make[1]: *** [srcDynlib] Error 2 make: *** [pkg-knncat] Error 2 *** Installation of knncat failed ***

...1;x1 > z <- solve(X1,x1) > </code> another way is to use directly dyn.load(): lapack.path <- paste0(file.path(R.home(), ifelse(.Platform$OS.type == "windows", ???????? file.path("bin", .Platform$r_arch, "Rlapack"), file.path("lib", "libRlapack"))), ???????? .Platform$dynlib.ext) dyn.load(lapack.path) followed by your code. Best, Serguei. > > followed by the rest of your script. > You will get a warning (I do) that "passing a character vector to .Fortran is not portable". > On other systems this may gave f...