search for: liblapack

...xt way down near the bottom it fails building lapack.so gcc -shared -L/usr/local/lib64 -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.5/../../../../lib64/liblapack.a: could not read symbols: Bad value The 'recompile with -fPIC' is bullsh*t. The pr...

....2 441664 52024 pts/1 Sl+ 06:44 0:00 /usr/lib/R/bin/exec/R user+ 13932 0.0 0.0 8900 660 pts/2 S+ 06:45 0:00 grep exec/R user at user:~$ lsof -p 13836 | grep 'blas\|lapack' R 13836 user mem REG 8,1 33562376 3961750 /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 R 13836 user mem REG 8,1 27200552 3961749 /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 user at user:~$ ls -l /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 -rw-r--r-- 1 root root 27200552 Jun 2 06:55 /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 use...

Hello To update from R 2.6 to 2.8 (on Ubuntu 8.04 both) I had to install new tcl and liblapack packages (excuse me it is in french): > sudo apt-get install r-base-dev > Lecture des listes de paquets... Fait > Construction de l'arbre des d?pendances > Lecture des informations d'?tat... Fait > Les paquets suppl?mentaires suivants seront install?s : > libbla...

...., summary(lm(...)) the lm is calculated, but the summary statement gives me the following error: Error in La.chol2inv(x, size) : lapack routines cannot be loaded In addition: Warning message: unable to load shared library "/usr/lob/R/modules/lapack.so": /usr/lib/Pentium4_SSE2_512KB/liblapack.so.3: undefined symbol: ieeeck_ I searched through the archives, but unfortunately I am just not LINUX-knowledgeable enough to understand the discussions concerning the algebra libraries. Following an older mail to this list, I did ldd /usr/lib/R/modules/lapack.so everything looks fine except pr...

.../usr/lib/x86_64-linux-gnu/atlas/libblas.so.3 35 manual mode 2 /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 10 manual mode 3 /usr/lib/x86_64-linux-gnu/openblas-openmp/libblas.so.3 95 manual mode update-alternatives --config liblapack.so.3-x86_64-linux-gnu There are 3 choices for the alternative liblapack.so.3-x86_64-linux-gnu (providing /usr/lib/x86_64-linux-gnu/ 3). Selection Path Priority Status ------------------------------------------------------------ 0...

...symbols are resolved, so that I can configure a package that I contributed to, and so that I can provide guidance to (linux / OSX) users of the package. To be concrete, my package uses the LAPACK Fortran symbol zsysv. This is not in libRlapack, but is defined on my system in the library /usr/lib64/liblapack.so. * I suspect that the reason the symbol is not in libRlapack is just one of economy, i.e., no use for the symbol in R routines, rather than for other nefarious reasons (?? some fundamental incompatibility with R?) I guess that most of my package users will have an R built without special...

dear debian-R group: I am using the stock ubuntu binary R 3.0.1 for ubuntu raring but on cinnamon mint olivia 15. I read dirk's gcbd paper from a couple of years ago. it suggests that stock blas is pretty bad compared to the four main alternatives. of course, dirk also maintains the binaries for debian/ubuntu R, so he probably knows the answer off hand. I installed libatlas3-base

...try to run anything that depends on lapack--like qr()--I get the following: Error in qr.default(a, LAPACK = TRUE) : lapack routines cannot be loaded In addition: Warning message: In qr.default(a, LAPACK = TRUE) : unable to load shared object '/usr/lib64/R/modules//lapack.so': /usr/lib/liblapack.so.3gf: undefined symbol: ATL_chemv If I delete the symbolic link to GotoBLAS2 and stick the default BLAS back in there, everything works fine, and it finds lapack once again. I guess I don't understand the relationship between BLAS and lapack well enough to figure out what's happening, b...

...n-Lenovo-IdeaPad-Y480:~$ sudo apt-get install r-base Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: cdbs dh-translations intltool libblas-dev libblas3 libbz2-dev libjpeg-dev libjpeg-turbo8-dev libjpeg8-dev liblapack-dev liblapack3 libncurses5-dev libpcre3-dev libpcrecpp0 libpng12-dev libreadline-dev libreadline6-dev libtinfo-dev libxml-parser-perl python-scour r-base-core r-base-dev r-base-html r-cran-boot r-cran-class r-cran-cluster r-cran-codetools r-cran-foreign r-cran-kernsmooth r-cran-lattice r-cr...

...rs can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading package lists... Done Building dependency tree Reading state information... Done The following extra packages will be installed: libblas-dev libfftw3-dev libhdf5-serial-dev liblapack-dev Suggested packages: libhdf5-doc The following packages will be REMOVED: r-base-dev refblas3-dev The following NEW packages will be installed: libblas-dev libfftw3-dev libhdf5-serial-dev liblapack-dev octave3.0-headers -- Gad Abraham Dept. CSSE and NICTA The University of Melbourne...

...Entering directory `/usr/local/src/R-2.1.0/src/modules/lapack' gcc -shared -L/usr/local/lib -o lapack.so Lapack.lo -llapack -lblas -lg2c -lm -lgcc_s /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.4/../../../../x86_64-suse-linux/bin/ld: /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.4/../../../../lib64/liblapack.a(dgecon.i): relocation R_X86_64_32 against `a local symbol' can not be used when making a shared object; recompile with -fPIC /usr/lib64/gcc-lib/x86_64-suse-linux/3.3.4/../../../../lib64/liblapack.a: could not read symbols: Bad value collect2: ld returned 1 exit status make[4]: *** [lapack....

...LAS with: sudo update-alternatives --config libblas.so.3-x86_64-linux-gnu the problem disappeared. The BLAS output of `sessionInfo` now that `solve` is working is: Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.9.0 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 while before when `solve` was not working it was: Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 so it seems the issue is with the Ubuntu package `libopenblas0-pthread` and has nothi...

Hi, Since upgrading to version 2.11.0~20100402-1, starting R fails with: /usr/lib64/R/bin/exec/R: error while loading shared libraries: libblas.so.3gf: cannot open shared object file: No such file or directory Is this occurring to others on sid? -- Seb

Just in case anyone cares or is hitting the same problem: to install current mgcv (1.0-5) on 1.9.0 on Knoppix/Debian unstable I had to: # cd /usr/lib # ln -s /usr/lib/atlas/libblas.so.3 libblas-3.so # ln -s /usr/lib/atlas/liblapack.so.3 liblapack-3.so Otherwise compilation couldn't find -lblas-3 or -llapack-3 (I could have gotten away with the links in /usr/lib/atlas instead of /usr/lib, as /usr/lib/atlas was listed in /etc/ld.so.conf) -- 620B Bartram Hall bolker at zoo.ufl.edu Zoology Dep...

Has anyone gotten lapack to work on centos 7? If so, how? Most recently, I installed lapace-devel and let yum bring in what it wanted. Whenever I try to link, I get a long list of undefined references ending with /usr/lib/gcc/x86_64-redhat-linux/4.8.5/../../../../lib64/liblapacke.so: undefined reference to `dgeevx_' [hennebry at localhost test]$ nm -D /usr/lib64/libblas.so | grep dge 0000000000018850 T dgemm_ 0000000000011080 T dgemv_ 00000000000170c0 T dger_ [hennebry at localhost test]$ confirmes that the reference is not there. Installing blas or atlas first does...

Hello, After upgrading to 2.7.2 this morning via the cran repository, I get the following error when calling R via the command line: Error in dyn.load(file, DLLpath = DLLpath, ...) : unable to load shared library '/home/jstumpf/R/i486-pc-linux-gnu-library/2.7/kernlab/libs/kernlab.so': libRlapack.so: cannot open shared object file: No such file or directory Fatal error: unable to

...ously unselected package libatlas3gf-base. (Reading database ... 142932 files and directories currently installed.) Unpacking libatlas3gf-base (from libatlas3gf-base_3.8.4-8ubuntu1+custom2_all.deb) ... dpkg: regarding libatlas-base-dev_3.8.4-8ubuntu1+custom2_amd64.deb containing libatlas-base-dev: liblapack-dev conflicts with liblapack-3.so libatlas-base-dev provides liblapack-3.so and is to be installed. dpkg: error processing libatlas-base-dev_3.8.4-8ubuntu1+custom2_amd64.deb (--install): conflicting packages - not installing libatlas-base-dev Selecting previously unselected package libatlas-dev....

...quot;, line 14: Need an operator make: fatal errors encountered -- cannot continue ERROR: compilation failed for package 'Matrix' ** Removing '/usr/local/lib/R/library/Matrix' ----- Under FreeBSD I have installed the LAPACK package (3.0.2) with library at location /usr/local/lib/liblapack.so.4 Is it possible that the Makefile of package Matrix fails because of that? Any help is appreciated, Rainer Hurling

In plotmath expressions, R's degree symbol, e.g. shown by plot(1, main = parse(text = "1*degree*C")) has sunk to halfway the text line, instead of touching its top. In older R versions this looked much better. -- Edzer Pebesma Institute for Geoinformatics Heisenbergstrasse 2, 48151 Muenster, Germany Phone: +49 251 8333081

...ossible such that 1 + p != 1 and I couldn't find anything to worry about. R version 3.6.0 (2019-04-26) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 19.04 Matrix products: default BLAS: /usr/lib/x86_64-linux-gnu/blas/libblas.so.3.8.0 LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.8.0 locale: [1] LC_CTYPE=pt_PT.UTF-8 LC_NUMERIC=C [3] LC_TIME=pt_PT.UTF-8 LC_COLLATE=pt_PT.UTF-8 [5] LC_MONETARY=pt_PT.UTF-8 LC_MESSAGES=pt_PT.UTF-8 [7] LC_PAPER=pt_PT.UTF-8 LC_NAME=C [9] LC_ADDRESS=C LC_TELEPHONE=C [11] LC_MEASUREMENT=pt_PT.UTF-8...