search for: lgfortran

I am trying to install two packages that are not available at CRAN (rmutil, dna). When trying the R CMD INSTALL with either file, I get an error message that ends with /usr/libexec/gcc/i686-apple-darwin8/4.0.1/libtool: can't locate file for: -lgfortran /usr/libexec/gcc/i686-apple-darwin8/4.0.1/libtool: file: -lgfortran is not an object file (not allowed in a library) Can anyone please help? I have R 2.6 on a Macbook running 10.4.10. I have installed XCode 2.5. A complete error message is given below. Thank you! Stefanie * Installing to l...

Dear all, I'm using R version 3.2.0 in Ubuntu 12.04 LTS. While trying to install any package I get the error: "/usr/bin/ld: cannot find -lgfortran" If I open a Terminal and run "ldconfig -p | grep libgfortran"?, I get:? "libgfortran.so.3 (libc6,x86-64) => /usr/lib/x86_64-linux-gnu/libgfortran.so.3" I've been an R user for two years and this is the first time I get this error. I've uninstalled R and re-i...

Good Morning, I am running R-2.6.1-1.rh5.i386.rpm under RED HAT Enterprise Linux 5, but I get this message error /usr/bin/ld/: cannot find -lgfortran when trying installing R CMD INSTALL ade4_1.4-5.tar.gz. Please help me to cope with this problem. Best regards, Souleymane _________________________________________________________________ [[alternative HTML version deleted]]

...web: academic2.american.edu/~jpnolan ........................................................................................................... ----------------- Makevar.win ------------------------------------------ ifeq "$(WIN)" "64" PKG_LIBS=../../../win64/test_win64.a -lgfortran else PKG_LIBS=../../../win32/test_win32.a -lgfortran endif PKG_CPPFLAGS=-I/JohnsWork/test/src/ ------------- 00install.out ----------------------------------------- * installing *source* package 'test' ... ** libs *** arch - i386 gcc -I"C:/PROGRA~1/R/R-215~1.0/include" -DNDE...

...command, but got warnings! install.packages("rstan", dependencies = TRUE, repos = "http://cran.r-project.org/") ... g++ -m64 -shared -L/usr/lib64/R/lib -L/usr/local/lib64 -o RcppEigen.so RcppEigen.o RcppExports.o fastLm.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: error: ld returned 1 exit status make: *** [RcppEigen.so] Error 1 ERROR: compilation failed for package 'RcppEigen' * removing '/usr/lib64/R/library/RcppEigen' ... ** package 'RCurl' successfully unpack...

...fined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o mhroc_prop.so mhroc_prop.o mvndstpack.o -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRlapack -L/Library/Frameworks/R.framework/Resources/lib/ppc -lRblas -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -L/usr/local/lib/gcc/powerpc-apple-darwin8/4.2.0 -lgfortran -lgcc_s.10.4 -lSystemStubs -F/Library/Frameworks/R.framework/.. -framework R Any ideas? Thank you, Richard Zur

...are/R/include -I/usr/share/R/include -fpic -g -O2 -c ranksort.c -o ranksort.o gfortran -fpic -g -O2 -c rcorr.f -o rcorr.o gfortran -fpic -g -O2 -c wclosest.f -o wclosest.o gcc -std=gnu99 -shared -o Hmisc.so cidxcn.o cidxcp.o hoeffd.o jacklins.o largrec.o ranksort.o rcorr.o wclosest.o -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [Hmisc.so] Error 1 ERROR: compilation failed for package 'Hmisc' ** Removing '/usr/local/lib/R/site-library/Hmisc' ** Restoring previous '/usr/local/lib/R/site-libr...

...part of the setup I chose "All" during installation, for all packages. So I have the FULL installlation of cygwin up and running, including gfortran. *Under Cygwin, how do I check and configure the path to the various libraries?* I am trying below command and it says, cannot find "lgfortran" But I have installed gfortran from "All" and "Libs" during setup I access R as below 1) R 2) install.pacakges('vegan') 3) After choosing mirror, here is the output I get * installing *source* package ‘vegan’ ... ** package ‘vegan’ successfully unpacked and MD5 sum...

...kages("robustbase"), which downloads the source and tries to compile. But the gcc step fails: gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status Also, when you say "fill a bug with Ubuntu", is there an r-sig-ubuntu or the Launchpad for general bug reports in Ubuntu? Thanks Agus Dirk...

...) I get: gcc -std=gnu99 -shared -o quantreg.so akj.o boot.o brute.o chlfct.o cholesky.o combos.o crq.o crqfnb.o dsel05.o etime.o extract.o idmin.o iswap.o kuantile.o mcmb.o penalty.o powell.o rls.o rq0.o rq1.o rqbr.o rqfn.o rqfnb.o rqfnc.o sparskit2.o srqfn.o srqfnc.o srtpai.o -llapack -lblas -lgfortran -lm -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -llapack > sessionInfo() R version 2.9.0 (2009-04-17) i486-pc-linux-gnu locale: LC_CTYPE=en_US.UTF-8;LC_NUMERIC=C;LC_TIME=en_US.UTF-8;LC_COLLATE=en_US.UTF-8;LC_MONETARY=C;LC_MESSAGES=en_US.UTF-8;LC_PAPER=en_US.UTF-8;LC_NAME=C;L...

...-2.15.3/library/Matrix/include" -I"/share/apps/R-2.15.3/library/stats/include" -fpic -g -O2 -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/share/apps/R-2.15.3/lib -lRlapack -L/share/apps/R-2.15.3/lib -lRblas -lgfortran -lm /usr/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package 'lme4' * removing '/share/apps/R-2.15.3/library/lme4' The downloaded source packages are in '/tmp/RtmpcTIcHw/downloaded...

....o d os_wglob.o malloc.o ../main/libmain.a ../appl/libappl.a ../nmath/libnmath.a getl ine/gl.a ../extra/xdr/libxdr.a ../extra/pcre/libpcre.a ../extra/bzip2/libbz2.a . ./extra/intl/libintl.a ../extra/trio/libtrio.a ../extra/tzone/libtz.a ../extra/t re/libtre.a ../extra/xz/liblzma.a dllversion.o -L. -lgfortran -lRblas -L../../bi n -lRzlib -lRgraphapp -lRiconv -lcomctl32 -lversion cp R.dll ../../bin x86_64-w64-mingw32-gfortran -O3 -c blas.f -o blas.o x86_64-w64-mingw32-gfortran -O3 -c cmplxblas.f -o cmplxblas.o -------- Building ../../../bin/Rblas.dll -------- x86_64-w64-mingw32-gcc -std=gnu99 -shared...

...problem is that if I try to install the source with install.packages("robustbase"), I get: gcc -std=gnu99 -shared -o robustbase.so R-rng4ftn.o init.o lmrob.o mc.o qn_sn.o rf-common.o rffastmcd.o rfltsreg.o wgt_himed.o -L/usr/lib/R/lib -lRlapack -lblas -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/gcc/i486-linux-gnu/4.2 -lgfortran -lm -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lRlapack collect2: ld returned 1 exit status Despite the fact that I do have Rlapack: ~$ R CMD config LAPACK_LIBS -L/usr/lib/R/lib -lRlapack Am I doing something wrong? Thanks Agus -- Dr. Agust...

..." -fpic -fmessage-length=0 -O2 -Wall -D_FORTIFY_SOURCE=2 -fstack-protector -funwind-tables -fasynchronous-unwind-tables -c local_stubs.c -o local_stubs.o gcc -std=gnu99 -shared -L/usr/local/lib64 -o lme4.so init.o lmer.o local_stubs.o -L/usr/lib64/R/lib -lRlapack -L/usr/lib64/R/lib -lRblas -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/lib64/gcc/x86_64-suse-linux/4.3/../../../../x86_64-suse-linux/bin/ld: cannot find -lgfortran collect2: ld returned 1 exit status make: *** [lme4.so] Error 1 ERROR: compilation failed for package ?lme4? * removing ?/home/suchy/R/x86_64-unknown-linux-gnu-library/2.12/l...

...ge ?gee? ... ** libs gfortran -fpic -O2 -g -c dgedi.f -o dgedi.o gfortran -fpic -O2 -g -c dgefa.f -o dgefa.o gcc -I/usr/lib64/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c ugee.c -o ugee.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o gee.so dgedi.o dgefa.o ugee.o -lblas -lgfortran -lm -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [gee.so] Error 1 ERROR: compilation failed for package ?gee? * removing ?/homedirs4/sghms/medmicro/users/awitney/R/x86_64-redhat-linux-gnu-library/2.12/gee? The downloaded packag...

...ude -I/usr/local/lib/R/include -I/usr/local/include -fpic -g -O2 -c rfutils.c -o rfutils.o gcc -std=gnu99 -shared -L/usr/local/lib -o randomForest.so classTree.o regTree.o regrf.o rf.o rfsub.o rfutils.o -L/usr/local/lib/gcc-4.2.2/gcc/i386-portbld-freebsd7.0/4.2.2 -L/usr/local/lib/gcc-4.2.2 -lgfortran -lm -lgcc_s -L/usr/local/lib/R/lib -lR /usr/bin/ld: cannot find -lgfortran *** Error code 1 Stop in /tmp/R.INSTALL.QXafuj/randomForest/src. ERROR: compilation failed for package 'randomForest' ** Removing '/usr/local/lib/R/library/randomForest' ** Restoring previous '/usr/local...

...gfortran_st_write' which could not be resolved! lli[0x85c245f] /lib/libc.so.6(abort+0x101)[0x6988b1] lli(_ZN4llvm3JIT25getPointerToNamedFunctionERKSs+0xd2)[0x8267952] Aborted I have also tried to link gfortran dynamic libraries like this and here is a error message: # llvm-ld test.bc testf.bc -lgfortran llvm-ld: error: Cannot find library 'gfortran' Note:gcc can find library 'gfortran'. -------------- next part -------------- An HTML attachment was scrubbed... URL: <http://lists.llvm.org/pipermail/llvm-dev/attachments/20081020/27a83930/attachment.html>

...routine initaquaphy(odeparms) external odeparms double precision pars(19) common /myparms/pars call odeparms(19, pars) return end $ R CMD SHLIB Aquaphy.f gfortran -fpic -g -O2 -c test.f -o test.o gcc -std=gnu99 -shared -L/usr/local/lib -o test.so test.o -lgfortran -lm and linked into the package dll (or so). Help for is.loaded() and getNativeSymbolInfo() say not to use symbol.For() to convert to Fortran-specific symbols. However, on Linux, getNativeSymbolInfo is unable to find 'initaquaphy' in 'test.so', but does find 'initaquaphy_...

...output: * installing *source* package ?gee? ... ** libs gfortran -fpic -O3 -pipe -g -c dgedi.f -o dgedi.o gfortran -fpic -O3 -pipe -g -c dgefa.f -o dgefa.o gcc -std=gnu99 -I/usr/share/R/include -fpic -O3 -pipe -g -c ugee.c -o ugee.o gcc -std=gnu99 -shared -o gee.so dgedi.o dgefa.o ugee.o -lblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lquadmath collect2: ld returned 1 exit status make: *** [gee.so] Error 1 ERROR: compilation failed for package ?gee? * removing ?/usr/local/lib/R/site-library/gee? The downloaded packages are in ?/tmp/Rtmp7Cg...

...ng: cast from pointer to integer of different size gfortran -fpic -O3 -pipe -g -c sparskit.f -o sparskit.o gfortran -fpic -O3 -pipe -g -c subscr.f -o subscr.o gcc -std=gnu99 -shared -o SparseM.so bckslv.o chol.o chol2csr.o cholesky.o csr.o extract.o iohb.o readwrite.o sparskit.o subscr.o -lgfortran -lm -lquadmath -L/usr/lib/R/lib -lR /usr/bin/ld: cannot find -lgfortran /usr/bin/ld: cannot find -lquadmath collect2: ld returned 1 exit status make: *** [SparseM.so] Error 1 ERROR: compilation failed for package ?SparseM? * removing ?/home/erin/R/x86_64-pc-linux-gnu-library/2.15/SparseM? The down...