search for: legendre

Displaying 20 results from an estimated 29 matches for "legendre".

2008 Sep 27
Double integration - Gauss Quadrature
...tegrate(function(y) { sapply(y, function(y) { integrate(function(x) x*y, 0, 1)$value }) }, 0, 1) but I would like to use Gauss Quadrature to do it. I have written the following code (using R's statmod package) which works fine for one integral but it doesn't work for a double one: # Gauss-Legendre abscissas nodes <- gauss.quad.prob(25,dist="uniform",l=-1,u=1)$nodes # and weights weights <- gauss.quad.prob(25,dist="uniform",l=-1,u=1)$weights weights <- weights*2 # Approximate integral of f from a to b using Gauss-Legendre gauss_legendre<-function(f,a,b,nodes,...
2012 Jun 06
pregunta sobre libro de Legendre
Hola a todos, Por casualidad alguno que tenga el libro de Legendre de Numerical Ecology with R sabe dónde o cómo bajar los data sets que se mencionan para seguir los ejemplos? Muchas gracias por su ayuda! ---- *Angela Andrea Camargo Sanabria* Estudiante Doctorado en Ciencias Biológicas Laboratorio de Ecología de poblaciones y comunidades tropicales Centro de Inve...
2010 Sep 21
partial dbRDA or CCA with two distance objects in Vegan.
...lyse genetic distance data ( provided as a dist object calculated using dist.genpop in package adegenet) with geographic distance partialled out ( provided as a distance object using dist function in veganthis method is attempting to follow the method used by Geffen et al 2004 as suggested by Legendre and . FORTIN (2010). I cannot see how to introduce the Conditioning ( partialled) second dist matrix. as you can see from the code snippet below, the two dist objects are of the same dimensions. - I get an error using capscale: Error in qr.fitted(Q, Xbar) : 'qr'...
2007 Mar 21
Gaussian Adaptive Quadrature
Hi all, Does anybody know any function that performs gaussian adapative quadrature integration of univariate functions? Thanks in advance, Regards, Caio __________________________________________________ [[alternative HTML version deleted]]
2015 May 27
[Bug 2302] with DH-GEX, ssh (and sshd) should not fall back to unconfigured DH groups or at least document this behaviour and use a stronger group
...know if there's a reason other than blind-spec-compliance. Pointers? > > Regards, > > --dkg One reason the generator of the full (Z/pZ)* is avoided is because knowledge of g^a and g^b (both known to Mallory) leaks information about the shared secret g^(ab) via their legendre symbols. This is particularly troublesome in the context of El Gamal. I don't have a reference to recommend off-hand but you might want to google for "decisional diffie hellman assumption". --mancha -------------- next part -------------- A non-text attachment was scrubbed... Nam...
2004 Jun 23
chronological clustering
Does anybody know of any R functions to perform chronological clustering as explained in: Legendre, P., S. Dallot & L. Legendre. 1985. Succession of species within a community: chronological clustering, with applications to marine and freshwater zooplankton. American Naturalist 125: 257-288.
2005 Aug 08
INDVAL and mvpart
Hi, I'd like to perform Dufrene-Legendre Indicator Species Analysis for a multivariate regression tree. However I have problems with arguments of duleg(veg,class,numitr=1000)function. How to obtain a vector of numeric class memberships for samples, or a classification object returned from mvpart? thanks in advance -- Best regards, Agn...
2013 Aug 22
Dear R-users I applied vegan's varpart function to partition the effects of explanatory matrices. Adj. R square for the unique fraction [a] is 0.25. Does anyone know why the decomposition by hand using rda gives me a different result for [a] (constrained proportion is 0.32)? I used cbind() for the conditional fractions, but it should be similar to condition()? Thanks very much
2007 Feb 27
RDA and trend surface regression
Dear all, I'm performing RDA on plant presence/absence data, constrained by geographical locations. I'd like to constrain the RDA by the "extended matrix of geographical coordinates" -ie the matrix of geographical coordinates completed by adding all terms of a cubic trend surface regression- . This is the command I use (package vegan): >rda(Helling ~
2001 Apr 10
Similarity matrix
I frequently use hclust on a similarity matrix. In R only a distance matrix is allowed. Is there a simple reliable transformation of a similarity matrix that will result in a distance matrix making hclust work the same as S-Plus with a similarity matrix? Venables & Ripley 3rd edition implies that a simple reversal of values will suffice. Thanks -Frank -- Frank E Harrell Jr
2008 Feb 28
intermediate linkage clustering
Does anybody know how to do a intermediate linkage clustering in R? Is there a command allready developed? Which package do I have to load? Thanks in advance yvo -- View this message in context: Sent from the R help mailing list archive at
2011 Jan 25
Multivariate polynomials Howto
Good Evening, I would like to work with multivariate polynomials (x and y variables). I know that there is a package called multipol but I am not sure that supports my needs. I use a function (in reality legendre.polynomials) which creates me the polynomials I want. For example the following returns > legendre.polynomials(2)[[2]] x (first order polynomial) I would like to calculate the polynomials with variable x with the polynomials with variable y. I do not know how I can do that in R as my function...
2013 Apr 30
vegan -varpart is bigger than 100% in total?
I am trying to find the percentage of the parameters explaining the bacterial community composition. I have one data matrix with relative abundance of OTUs and one with environmental parameters. I used varpart in vegan package but the values in the venn diagram is bigger than 100% in total.How is it possible? What might be the reason? Thank you library(vegan) gotud <-
2015 Jun 12
[Bug 2302] with DH-GEX, ssh (and sshd) should not fall back to unconfigured DH groups or at least document this behaviour and use a stronger group
On Fri 2015-06-12 01:52:54 -0400, Mark D. Baushke wrote: > I have communicated with Allen Roginsky on this topic and I have been given permission to post his response. > > In this message below, the 'vendor' was Darren Tucker's generated prime > that used a generator value of 5. > > -- Mark > > From: "Roginsky, Allen" <allen.roginsky at
2005 Jun 30
nfs install : kernel panic
...installs, but it tells me " don't exist" (remark the two // after the ip address, both in ftp & http installs. i tried to do mnt/centos but the installer told me "no!"). thanks, legendre renald
2008 Aug 01
3 opportunities open for Full Time positions in Toronto, Canada
...k, company paid beverages (POP, Juice, Coffee, Tea). Good work environment. Position 1 may include occasional travel to European and Caribbean locations. We are looking to fill these positions as soon as possible. Please forward your resume if you believe you have the skill set required. Colin Legendre CCNP, MCP Manager, Infrastructure Management Services Net Present Services Ltd. e: <>
2013 Oct 11
Gaussian Quadrature for arbitrary PDF
Hi all, We know that Hermite polynomial is for Gaussian, Laguerre polynomial for Exponential distribution, Legendre polynomial for uniform distribution, Jacobi polynomial for Beta distribution. Does anyone know which kind of polynomial deals with the log-normal, Student抯 t, Inverse gamma and Fisher抯 F distribution? Thank you in advance! David [[alternative HTML version deleted]]
2011 Mar 28
ordination in vegan
Hi all, I have site data with plant species cover and am looking for trends. I'm kind of new to this, but have done lots of reading and can't find an answer. I tried decorana (I know it's been replaced by ca.) and see a trend, but I'm not sure what it means. Is there a way to get the loadings/eigenvectors of the axes (like in PCA)? Is there a way to do this with rda() too?
2013 May 02
rda variance partioning in vegan problems
This is not a request for coding help so there is no reproducible code, rather I am trying to figure out if anyone had had a similar experience. My question is related to partitioning the variance in rda (vegan) results for multiple groups of variables. I have a high dimensional dataset with 79 explanatory variables and 9 response variables. Within those 79 explanatory variables there are ~8
2013 Dec 17
What is the formula of Pseudo-F statistic in capscale in vegan?
...DifView 1.4892 1.7299 VolAuton 2.2923 2.2925 (2) pseudo-F formula We know that PRIMER uses the following formula to calculate the pseudo-F for a sequential test of significance (equation 4.3, Anderson, Gorley, and Clarke 2008, Chapter 4. Pg. 129, and based on pseudo-F equation in Legendre and Anderson (1999), Ecological Monographs vol. 69): F= (SSFull - SSReduced)/(qFull-qReduced) (SSTotal-SSFull)/(N - qFull - 1) (3) R code ## creating Bray-Curtis of Biodiversity data H.BC <- vegdist(H.Full [,14:211], "bray") ## Distance based redundancy ana...