Displaying 20 results from an estimated 33 matches for "jgentri".
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jgentry
2003 May 23
1
Problem building R-devel
Hello ...
I went to build R-devel today (Redhat Linux 7.2, kernel 2.4.9-31, gcc
2.96) and am getting this error:
gcc -I../../src/extra/zlib -I. -I../../src/include -I../../src/include
-I/usr/local/include -DHAVE_CONFIG_H -D__NO_MATH_INLINES -mieee-fp -g -O2
-c pcre.c -o pcre.o
pcre.c: In function `do_pgrep':
pcre.c:71: parse error before `char'
pcre.c:72: `s' undeclared (first use
2005 Jul 19
1
Problem building R
I initially thought this only was the case for me on R-devel, but also
just tested it on the current R-patched and R-2.1.1 (so perhaps this more
belongs on R-help, but ...).
I'm having an odd error with the makefiles in src/library/XXX while
building R. When it tries to create the 'po' directory, the Makefile
specifies:
@if test -d $(srcdir)/inst/po; then \
$(MKINSTALLDIRS)
2003 Dec 17
2
Can't start R-devel
Hello ...
With a new checkout of R-devel, I'm getting the following error on
startup:
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for a HTML browser interface to help.
Type 'q()' to quit R.
Error in open.connection(con, "rb") : unable to open connection
In addition: Warning message:
cannot open compressed file
2003 Jan 17
2
Methods package is now attached by default
The current r-devel (aka R 1.7.0) now attaches the package "methods" by
default at startup.
A new option, "defaultPackages", is set to c("methods", "ctest") by
default, causing the .First in package base to require those two
packages at startup.
There are two main known differences from having methods attached:
- the definition of class() changes, in
2004 Aug 23
1
Possible Latex problem in R-devel?
I'm getting this error when installing packages w/ a checkout of R from a
a little bit ago (23-Aug-2004, approx 1pm eastern US time):
** help
Bareword found where operator expected at
/usr/home/jgentry/R/share/perl/R/Rdconv.pm line 2331, near "$latexout
latex_link_trans0"
(Missing operator before latex_link_trans0?)
It isn't obvious to me what the error is, although
2004 Aug 23
2
Installing package lattice
Here's another issue (that might well be operator error):
> install.packages("lattice")
...
...
** save image
Loading required package: grid
Error in importIntoEnv(impenv, impnames, ns, impvars) :
object(s) 'dev.list', 'cm.colors', 'gray', 'heat.colors' are not
exported by 'namespace:graphics'
Execution halted
ERROR: execution of
2009 Feb 04
3
auth_debug_passwords
Hi. I'm new to Dovecot and about to start using it in production. In
the config file, I set the option, auth_debug_passwords, to yes. I do
not see any failed passwords logged, however. It did cause more verbose
authentication logging, but failed passwords are still hidden.
I have also set these options to yes, because I thought they might be
required for auth_debug_passwords to work:
2003 Nov 13
2
install.packages() for a local file
Hello ...
I see that on Windows one can specify a filename as the "pkgs" argument
and then set CRAN=NULL when calling install.packages() for a local
file. Is there a way to do this on unix? It doesn't appear to be
possible, but perhaps I am missing something here.
Also, if indeed there is no method to do this on unix, is there a reason
behind it or has it just never been
2002 Feb 25
2
Samba through modem ?!
Hello,
Before anything else, I'm sorry about my bad english!
I'm using mgetty to provide a kind of RAS to my network... but I'm
unable to provide access to the samba through the modem...
This is my enviroment:
-Slackware 8.0
-Kernel 2.4.17
-Samba 2.2.3a
-Mgetty-1.1.28
-Iptables v1.2.5
What do I need to access my samba network through the modem?
Best
2003 Apr 28
1
installed.packages() with no packages
Hello ...
I found this due to a situation where installed.packages() was given a
lib.loc argument that turned out to not have any R packages installed. As
an example:
> z <- tempfile()
> dir.create(z)
> installed.packages(z)
Error in "colnames<-"(*tmp*, value = c("Package", "LibPath", pkgFlds)) :
dimnames applied to non-array
Looking at the code,
2003 Sep 16
2
couldn't find function "setClass"
Hello ...
With a new checkout of R-devel (last update was 2003-09-11) we are having
a problem (it seems to be happening to all of us here on a few different
machines) where during install/check/etc when the 'save image' happens (in
packages using 'save image'):
** save image
Error: couldn't find function "setClass"
Execution halted
This is for all packages that
2004 Mar 31
2
segfault in browseURL()
Hello ...
Using Win2K (and reportedly WinXP), when the length of the 'url' string
>= 280 characters, a segmentation fault occurs.
This doesn't seem to be affecting unix machines.
Thanks
-J
2003 May 23
2
RGui Startup Error on Win2000 (PR#3084)
Full_Name: Girish Zambre
Version: 1.7.0
OS: Win2000
Submission from: (NULL) (66.7.170.2)
I just started looking at and trying R. The problem could be external to R, but
I really don't know. It reads
'The instruction at "0x004412f0" referenced memory a "0x0095e40c". the memory
could not be "read" '
I get this after installing modules
2007 Jan 28
2
reposTools
Dear List,
I tested the example in the reposTools vignette:
library(reposTools);
Loading required package: tools
genRepos("Test
Repository", "http://biowww.dfci.harvard.edu/~jgentry/","newRepos");
Error in rep.int(colnames(x), nr) : unimplemented type 'NULL' in 'rep'
Could someone help me out with this one?
I'd appreciate all help....
I am
2003 Jan 03
3
Packages w/ S4 classes in C?
Hello ...
Does anyone know of a package (or other code) out there which has handled
S4 classes in C? I realize that a lot of this stuff is fairly new in
R-devel, so my assumption is no - but there seems to be some deviation
from the green book that is really throwing me off, and I'm looking for
some sort of front-to-back example.
Thanks
-Jeff
2003 Sep 08
1
Stifling REprintf() output
In some code that I have written, use of url() is generating the output
line:
"cannot open: HTTP status was `404 Not Found`"
The problem is that I do not want R to be outputting any error messages -
I have 'internet.info' set to 3, show.error.messages set to FALSE and the
url() wrapped in a try(). When the URL is not found I am already handling
it in a manner consistent with
2006 Apr 24
0
String substitution on package install?
Hello ...
I was working with some older code today that started throwing errors I'd
never seen before. The source appears to be some sort of substition of
the text of the code on install time, I was hoping that someone might be
able to point me to what I'm doing wrong.
If I take the following function:
foo <- function() {
test <- "This is a test"
2003 Feb 06
1
Verbosity when using urls in R-devel
Hello ...
Using a relatively recent rsync of R-devel (it started at least after
1/16/03 as I have a copy of R-devel from then and this doesn't happen),
I've noticed a bit more chatter to the console when accessing URL
connections.
> z <- url("http://www.bioconductor.org/main.html")
> readLines(z)[1]
connected to 'www.bioconductor.org' on port 80.
<snip
2003 Feb 11
1
Ruuid package
Hello ...
I would like to direct people's attention to the package "Ruuid" on the
Biconductor website
(http://www.bioconductor.org/repository/devel/package/html/Ruuid.html).
It's purpose is to generate UUID values, and has a simple R interface
(currently one function: getuuid(), with multiple options).
Under unix, it uses Theodore Ts'o's libuuid to create and manage
2003 Nov 19
0
Bioconductor Programmer's Reference
Hello ...
As part of the work we are doing to provide useful information on the
Bioconductor Developer Page (available by clicking on the 'Developer Page'
link on the left hand side of www.bioconductor.org), we would like to
direct people's attention to the section entitled "Programmer's
Reference". The intent is to provide papers and guidelines that provide
useful tips