search for: jgentry

...: In function `do_pgrep': pcre.c:71: parse error before `char' pcre.c:72: `s' undeclared (first use in this function) pcre.c:72: (Each undeclared identifier is reported only once pcre.c:72: for each function it appears in.) make[3]: *** [pcre.o] Error 1 make[3]: Leaving directory `/home/jgentry/R-1.8.0/src/main' make[2]: *** [R] Error 2 make[2]: Leaving directory `/home/jgentry/R-1.8.0/src/main' make[1]: *** [R] Error 1 make[1]: Leaving directory `/home/jgentry/R-1.8.0/src' make: *** [R] Error 1 On my initial attempt I did a 'make clean' before configuring & build...

.../library/$(pkg)/po; \ cp -pr $(srcdir)/inst/po/* $(top_builddir)/library/$(pkg)/po; \ find "$(top_builddir)/library/$(pkg)/po" -name .svn -type d -prune \ -exec rm -rf \{\} \; 2>/dev/null; \ fi However, mine dies with the error: make[3]: Entering directory `/mnt/disk2/home/jgentry/R-devel/src/library/base' building package 'base' all.R is unchanged make[3]: *** [all] Error 127 make[3]: Leaving directory `/mnt/disk2/home/jgentry/R-devel/src/library/base' make[2]: *** [R] Error 1 If I put an echo in between the find and the 'fi', it will no longer thro...

...9;demo()' for some demos, 'help()' for on-line help, or 'help.start()' for a HTML browser interface to help. Type 'q()' to quit R. Error in open.connection(con, "rb") : unable to open connection In addition: Warning message: cannot open compressed file `/home/jgentry/R-1.9.0/library/methods/R/all.rda' > search() [1] ".GlobalEnv" "package:stats" "package:graphics" "package:utils" [5] "Autoloads" "package:base" Warning message: package methods in options("defaultPacka...

The current r-devel (aka R 1.7.0) now attaches the package "methods" by default at startup. A new option, "defaultPackages", is set to c("methods", "ctest") by default, causing the .First in package base to require those two packages at startup. There are two main known differences from having methods attached: - the definition of class() changes, in

I'm getting this error when installing packages w/ a checkout of R from a a little bit ago (23-Aug-2004, approx 1pm eastern US time): ** help Bareword found where operator expected at /usr/home/jgentry/R/share/perl/R/Rdconv.pm line 2331, near "$latexout latex_link_trans0" (Missing operator before latex_link_trans0?) It isn't obvious to me what the error is, although commenting out line 2331 definitely causes the error to go away. -J

...mportIntoEnv(impenv, impnames, ns, impvars) : object(s) 'dev.list', 'cm.colors', 'gray', 'heat.colors' are not exported by 'namespace:graphics' Execution halted ERROR: execution of package source for 'lattice' failed ** Removing '/usr/home/jgentry/R-devel/library/lattice' Thanks -J

...args: blocking=yes socket: type: listen client: path: /var/run/dovecot/auth-client mode: 432 master: path: /var/run/dovecot/auth-master mode: 384 host:/var/log# Thanks for any light you could shine on this problem. Josh -- Josh Gentry help at swcp.com * jgentry at swcp.com * 505-232-7992 Customer service in the 21st century.

Hello ... I see that on Windows one can specify a filename as the "pkgs" argument and then set CRAN=NULL when calling install.packages() for a local file. Is there a way to do this on unix? It doesn't appear to be possible, but perhaps I am missing something here. Also, if indeed there is no method to do this on unix, is there a reason behind it or has it just never been

Hello, Before anything else, I'm sorry about my bad english! I'm using mgetty to provide a kind of RAS to my network... but I'm unable to provide access to the samba through the modem... This is my enviroment: -Slackware 8.0 -Kernel 2.4.17 -Samba 2.2.3a -Mgetty-1.1.28 -Iptables v1.2.5 What do I need to access my samba network through the modem? Best

Hello ... I found this due to a situation where installed.packages() was given a lib.loc argument that turned out to not have any R packages installed. As an example: > z <- tempfile() > dir.create(z) > installed.packages(z) Error in "colnames<-"(*tmp*, value = c("Package", "LibPath", pkgFlds)) : dimnames applied to non-array Looking at the code,

Hello ... With a new checkout of R-devel (last update was 2003-09-11) we are having a problem (it seems to be happening to all of us here on a few different machines) where during install/check/etc when the 'save image' happens (in packages using 'save image'): ** save image Error: couldn't find function "setClass" Execution halted This is for all packages that

Hello ... Using Win2K (and reportedly WinXP), when the length of the 'url' string >= 280 characters, a segmentation fault occurs. This doesn't seem to be affecting unix machines. Thanks -J

Full_Name: Girish Zambre Version: 1.7.0 OS: Win2000 Submission from: (NULL) (66.7.170.2) I just started looking at and trying R. The problem could be external to R, but I really don't know. It reads 'The instruction at "0x004412f0" referenced memory a "0x0095e40c". the memory could not be "read" ' I get this after installing modules

Dear List, I tested the example in the reposTools vignette: library(reposTools); Loading required package: tools genRepos("Test Repository", "http://biowww.dfci.harvard.edu/~jgentry/","newRepos"); Error in rep.int(colnames(x), nr) : unimplemented type 'NULL' in 'rep' Could someone help me out with this one? I'd appreciate all help.... I am running R 2.4.1 windows XP. YUE

Hello ... Does anyone know of a package (or other code) out there which has handled S4 classes in C? I realize that a lot of this stuff is fairly new in R-devel, so my assumption is no - but there seems to be some deviation from the green book that is really throwing me off, and I'm looking for some sort of front-to-back example. Thanks -Jeff

In some code that I have written, use of url() is generating the output line: "cannot open: HTTP status was `404 Not Found`" The problem is that I do not want R to be outputting any error messages - I have 'internet.info' set to 3, show.error.messages set to FALSE and the url() wrapped in a try(). When the URL is not found I am already handling it in a manner consistent with

Hello ... I was working with some older code today that started throwing errors I'd never seen before. The source appears to be some sort of substition of the text of the code on install time, I was hoping that someone might be able to point me to what I'm doing wrong. If I take the following function: foo <- function() { test <- "This is a test"

Hello ... Using a relatively recent rsync of R-devel (it started at least after 1/16/03 as I have a copy of R-devel from then and this doesn't happen), I've noticed a bit more chatter to the console when accessing URL connections. > z <- url("http://www.bioconductor.org/main.html") > readLines(z)[1] connected to 'www.bioconductor.org' on port 80. <snip

Hello ... I would like to direct people's attention to the package "Ruuid" on the Biconductor website (http://www.bioconductor.org/repository/devel/package/html/Ruuid.html). It's purpose is to generate UUID values, and has a simple R interface (currently one function: getuuid(), with multiple options). Under unix, it uses Theodore Ts'o's libuuid to create and manage

Hello ... As part of the work we are doing to provide useful information on the Bioconductor Developer Page (available by clicking on the 'Developer Page' link on the left hand side of www.bioconductor.org), we would like to direct people's attention to the section entitled "Programmer's Reference". The intent is to provide papers and guidelines that provide useful tips