search for: homology

Dear all, Here is my code which am using to combine 5th column from different data sets. Here is the function to do my job genesymbol.append.file <-NULL gene.column <- NULL readGeneSymbol <- function(files,genesymbol.column=5){ for(i in fnames){ temp <- read.table(fnames,header=T,sep="\t",stringsAsFactors=F,quote="\"")

Hi: I have clustered microarray gene expression data and trying to map between microarray probe, gene, pathway, gene ontology, and homology for a set of (affy) microarray probes. Is there any package in R which facilitates this? I am looking at bioconductor, but till now could not find a solution. A link to some worked example would be appreciated. Thanks and regards. John [[alternative HTML version deleted]]

Dear All, The function curve() draws the graph of functions from R to R. Is there some homologous function to curve() to draw functions from R^2 to R? Thanks in advance, Paul

Steffen, When the new biomaRt tries to load it errors out because I do not have RMySQL installed. There is not a Windows binary for RMySQL and it does contain C code that I do not know how to build. I do not use the MySQL option in biomaRt. Does RMySQL need to be a required dependency? Below is my screen output and sessionINfo. require(biomaRt) Loading required package: biomaRt Loading required

Hello, I've just started R, and I'm getting a bit mad using it. I've managed to produce a barplot with the labels for the ytick marks placed horizontally (perpendicular to the y-axis) usiing par(las=1). The problem is that most of my labels are in part beyond the plotting area because they are rather long (e.g. "H. sapiens", "D. melanogaster" ...). What is the

Hi Joshua, thanks for answer. In this particular test my extension is on a simple network. There is no NAT, just an asterisk running on a virtual machine on a 7- 64bit CentOs. I am simulating an environment to be able to use PJSIP on my client. And even in this small environment, my extension does not call. My problem with NAT was with SIP "one way audio" on a client. All of this

I have a matrix of similarity scores that I want to convert into a matrix of dissimilarity scores so that I can apply some clustering methods to the data. That is, high values in my matrix signify similarity and low values (zero being the lowest) signify no similarity. What functions/options in R or its packages are available for making this kind of transformation of a matrix?

Hello Guys, I use Xen Server 3.4.3 version, with kernel xen 2.6.18.194. Recently we change any server for HP DL360 G7 with HP Smart Array P410i Controller, but when i install the Xen and reboot machine, the machine does not back because kernel panic happen. I checked the grub conf and see than after install xen server, the line "kernel /xen.gz-2.6.18-194.el5" has change to "kernel

...e - Annotation Overview 2: annotate - Basic GO Usage 3: annotate - HowTo: Get HTML Output 4: annotate - HowTo: use chromosomal information 5: annotate - HOWTO: Use the online query tools 6: annotate - Using Affymetrix Probe Level Data 7: annotate - Using Data Packages 8: annotate - Using the homology package 9: AnnotationDbi - AnnotationDbi 10: AnnotationDbi - SQLForge 11: Biobase - An introduction to Biobase and ExpressionSets 12: Biobase - Bioconductor Overview 13: Biobase - esApply Introduction 14: Biobase - Notes for eSet developers 15: Biobase - Notes for writing introductory 'how to&...

Hello R-help group, I have a question about merging lists. I have two lists: Genes list (hSgenes) name chr strand start end transStart transEnd symbol description feature ENSG00000223972 1 1 11874 14412 11874 14412 DEAD/H box polypeptide 11 like 1DEAD/H box polypeptide 11 like 3DEAD/H box polypeptide 11 like 9 ;;

On Tue, Aug 18, 2020 at 9:00 AM Roberto < roberto.medola at gasparimsantos.com.br> wrote: > Hi Joshua, thanks for answer. > In this particular test my extension is on a simple network. There is no > NAT, just an asterisk running on a virtual machine on a 7- 64bit CentOs. I > am simulating an environment to be able to use PJSIP on my client. And even > in this small

I have a question in R. In directory H:/Delta_angle I have 19 files like this: ALA.delta ASN.delta ASP.delta CYS.delta GLN.delta GLU.delta HIS.delta ILE.delta LEU.delta LYS.delta MET.delta PHE.delta PRO.delta SER.delta THR.delta TRP.delta TYR.delta VAL.delta I want to read these files to 19 data sets in R. All these data sets have "P","AA",index","delta"

Hello. I am having a lot of problems with SIP through NAT. So, I decided to adopt PJSIP. However, I am not able to make the extensions ring when receiving a call from the queue. I'm using telnet to include the extension and on the asterisk console, it even shows Called PJSIP/6001, but the extension doesn't ring. If I call from extension to extension, it works normally. telenet:

Package: xen-utils-3.2-1 Severity: grave Hi, maintainer! This message about the error concerns a few packages at once. I've tested all the packages (for Lenny) on my Debian mirror. All scripts of packages (marked as executable) were tested. In some packages I've discovered scripts with errors which may be used by a user for damaging important system files or user's files. For

Hi, I am new to virtualization and I am having the obvious hassle of choosing between Xen and KVM. Can Xen experts help me with this? Regards, Arindam _______________________________________________ Xen-users mailing list Xen-users@lists.xen.org http://lists.xen.org/xen-users