search for: homolog

Dear all, Here is my code which am using to combine 5th column from different data sets. Here is the function to do my job genesymbol.append.file <-NULL gene.column <- NULL readGeneSymbol <- function(files,genesymbol.column=5){ for(i in fnames){ temp <- read.table(fnames,header=T,sep="\t",stringsAsFactors=F,quote="\"")

Hi: I have clustered microarray gene expression data and trying to map between microarray probe, gene, pathway, gene ontology, and homology for a set of (affy) microarray probes. Is there any package in R which facilitates this? I am looking at bioconductor, but till now could not find a solution. A link to some worked example would be appreciated. Thanks and regards. John [[alternative HTML version deleted]]

Dear All, The function curve() draws the graph of functions from R to R. Is there some homologous function to curve() to draw functions from R^2 to R? Thanks in advance, Paul

...(317) 663-0513 Home (no voice mail please) 1-(317)-536-2730 FAX -----Original Message----- From: Steffen Durinck [mailto:durincks at mail.nih.gov] Sent: Friday, January 26, 2007 9:24 AM To: Kimpel, Mark William Cc: bioconductor at stat.math.ethz.ch Subject: Re: [BioC] problem with biomaRt getHomolog function Hi Mark, I think the rat entrezgene id 613226 is a recently added entrezgene id and is not yet available in Ensembl. Ensembl updates every two months and the last update of entrezgene id 613226 appears to be December 26 of 2006. So this might be the reason. Also I would suggest you...

Hello, I've just started R, and I'm getting a bit mad using it. I've managed to produce a barplot with the labels for the ytick marks placed horizontally (perpendicular to the y-axis) usiing par(las=1). The problem is that most of my labels are in part beyond the plotting area because they are rather long (e.g. "H. sapiens", "D. melanogaster" ...). What is the

...er. on console: "pjsip set logger on" "pjsip set history on" on file Logger.conf: debbuger => debug, trace asterisk -rx "reload" Make same calls, and opening the file only the following appears: [2020-08-18 08:46:47.778] Asterisk 17.6.0 built by root @ asterisk-homolog on a x86_64 running Linux on 2020-08-13 22:40:11 UTC\ Em 17/08/2020 18:57, Joshua C. Colp escreveu: > On Mon, Aug 17, 2020 at 6:16 PM Roberto > <roberto.medola at gasparimsantos.com.br > <mailto:roberto.medola at gasparimsantos.com.br>> wrote: > > Hello. > >...

...or its packages are available for making this kind of transformation of a matrix? Specifically, I am a molecular biologist. I have a set of 700+ nucleotide sequences i want to group into clusters based on sequence similarities. There is a wide range of sequences in the set, some of which are homologous to other sequences in the set. I want to use clustering to identify these groups. If the sequences were related and good be trimmed to the same length, I would do an alignment and then use phylip (or some other distance method) to create a distance matrix, but since my sequences are unrela...

Hello Guys, I use Xen Server 3.4.3 version, with kernel xen 2.6.18.194. Recently we change any server for HP DL360 G7 with HP Smart Array P410i Controller, but when i install the Xen and reboot machine, the machine does not back because kernel panic happen. I checked the grub conf and see than after install xen server, the line "kernel /xen.gz-2.6.18-194.el5" has change to "kernel

...e - Annotation Overview 2: annotate - Basic GO Usage 3: annotate - HowTo: Get HTML Output 4: annotate - HowTo: use chromosomal information 5: annotate - HOWTO: Use the online query tools 6: annotate - Using Affymetrix Probe Level Data 7: annotate - Using Data Packages 8: annotate - Using the homology package 9: AnnotationDbi - AnnotationDbi 10: AnnotationDbi - SQLForge 11: Biobase - An introduction to Biobase and ExpressionSets 12: Biobase - Bioconductor Overview 13: Biobase - esApply Introduction 14: Biobase - Notes for eSet developers 15: Biobase - Notes for writing introductory 'how to...

...972 1 1 11874 14412 11874 14412 DEAD/H box polypeptide 11 like 1DEAD/H box polypeptide 11 like 3DEAD/H box polypeptide 11 like 9 ;; [Source:UniProtKB/TrEMBL;Acc:B7ZGX0] gene ENSG00000227232 1 -1 14363 29570 17551 29343 WASH5P WAS protein family homolog 5 pseudogene (WASH5P), non-coding RNA [Source:RefSeq DNA;Acc:NR_024540] gene ..... Chers list (chersList) name chr start end cellType antibody features maxLevel score chr1.cher1 1 859132 859732 human AB ENSG00000223764 ENSG00000231958 ENSG00000187634...

...t; > "pjsip set history on" > > on file Logger.conf: > debbuger => debug, trace > > asterisk -rx "reload" > > Make same calls, and opening the file only the following appears: > > [2020-08-18 08:46:47.778] Asterisk 17.6.0 built by root @ asterisk-homolog > on a x86_64 running Linux on 2020-08-13 22:40:11 UTC\ > The PJSIP packet logging are verbose messages, if verbose is enabled on console or file they will show up there. The history module also uses CLI commands to examine the history log. -- Joshua C. Colp Asterisk Technical Lead Sangoma...

I have a question in R. In directory H:/Delta_angle I have 19 files like this: ALA.delta ASN.delta ASP.delta CYS.delta GLN.delta GLU.delta HIS.delta ILE.delta LEU.delta LYS.delta MET.delta PHE.delta PRO.delta SER.delta THR.delta TRP.delta TYR.delta VAL.delta I want to read these files to 19 data sets in R. All these data sets have "P","AA",index","delta"

Hello. I am having a lot of problems with SIP through NAT. So, I decided to adopt PJSIP. However, I am not able to make the extensions ring when receiving a call from the queue. I'm using telnet to include the extension and on the asterisk console, it even shows Called PJSIP/6001, but the extension doesn't ring. If I call from extension to extension, it works normally. telenet:

...you can see in debian-devel@: http://lists.debian.org/debian-devel/2008/08/msg00271.html Binary-package: r-base-core-ra (1.1.1-1) file: /usr/lib/Ra/lib/R/bin/javareconf Binary-package: rccp (0.9-2) file: /usr/lib/rccp/delqueueask Binary-package: mafft (6.240-1) file: /usr/bin/mafft-homologs Binary-package: openoffice.org-common (1:2.4.1-6) file: /usr/lib/openoffice/program/senddoc Binary-package: crossfire-maps (1.11.0-1) file: /usr/share/games/crossfire/maps/Info/combine.pl Binary-package: sgml2x (1.0.0-11.1) file: /usr/bin/rlatex Binary-package: liguidsoap (0.3.6-4)...

Hi, I am new to virtualization and I am having the obvious hassle of choosing between Xen and KVM. Can Xen experts help me with this? Regards, Arindam _______________________________________________ Xen-users mailing list Xen-users@lists.xen.org http://lists.xen.org/xen-users