search for: hfwutil

...a profiler for R that informs about a) how > much processing time is used by particular functions and commands and > b) how much memory is used for creating how many objects (or types of > data structures)? Haven't tried it; but stumbled across "Profiling()" function in the HFWUtils package. Starting at bottom of page 29-30 of HFWUtils package user manual: profiling plots tree of execution times Description determines how much time a function its and sub-functions (and sub-functions thereof etc) take to run (?profiling?). Also draws picture of this using the interrelations...

...(0.1.2), DEMEtics (0.8.1), emdbook (1.2.2.1), FitAR (1.80), fpc (2.0-2), futile.paradigm (1.0.1), futile.paradigm (1.0.2), gamlss (4.0-3), gamlss.add (4.0-1), gamlss.data (4.0-1), genoPlotR (0.5.1), GEOmap (1.5-9), GEVcdn (1.0.2), GillespieSSA (0.5-4), gllm (0.33), glmperm (1.0-3), gRapHD (0.1.7), HFWutils (0.9.4.2010.08.20), hts (1.3), HWEintrinsic (1.1.1), igraph (0.5.4-1), intervals (0.13.3), ipw (1.0-6), laeken (0.1.3), LDheatmap (0.2-9), lme4 (0.999375-35), lmPerm (1.1-2), lordif (0.1-6), lpSolveAPI (5.5.2.0), magma (0.2.1-3), MCMCglmm (2.06), mondate (0.9.08.15), mondate (0.9.08.19.02), mratio...

I'm in the process of converting some S3 methods to S4 methods. I have this function : setGeneric("enrichmentCalc", function(rs, organism, seqLen, ...){standardGeneric("enrichmentCalc")}) setMethod("enrichmentCalc", c("GenomeDataList", "BSgenome"), function(rs, organism, seqLen, ...) { ... ... ... })

CRAN (and crantastic) updates this week New packages ------------ * Bergm (1.0) Alberto Caimo http://crantastic.org/packages/Bergm Functions implementing Bayesian estimation for exponential random graph models via exchange algorithm Updated packages ---------------- lmtest (0.9-26), logcondens (1.3.5), MTSKNN (0.0-4), pmml (1.2.21), r2lUniv (0.9.4), rattle (2.5.11), rgdal (0.6-23),