search for: grbase

Dear all, My gRbase package imports functionality from the bioconductor packages graph, Rgraphviz and RBGL. To make installation of gRbase easy, I would like to have these bioconductor packages installed in connection with installation of gRbase, but to do so the user must use setRepositories() to make sure that R al...

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421K...

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421K...

Building a package using R.2.8.0 on Windows XP gives problems when compiling C code: Trying to run 'rcmd build' on R.2.8.0 on Windows XP gives ... ---------- Making package gRbase ------------ adding build stamp to DESCRIPTION making DLL ... gcc -std=gnu99 -Ic:/Programs/R/current/include ------------------------------------ gcc.exe: no input files make[3]: *** [setops.o] Error 1 make[2]: *** [srcDynlib] Error 2 make[1]: *** [all] Error 2 make: *** [pkg-gRbase] Error 2...

Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421K...

...bounces at r-project.org> on behalf of S?ren H?jsgaard <sorenh at math.aau.dk> Sent: 08 July 2018 15:46 To: r-devel at r-project.org Subject: Re: [Rd] [R] consider running tools::compactPDF(gs_quality = "ebook") Dear all, I run R CMD build --compact-vignettes="both" gRbase and/or R CMD build --compact-vignettes="gs+qpdf" gRbase and in the log from r-devel (on winbuilder) I get * checking sizes of PDF files under 'inst/doc' ... WARNING 'gs+qpdf' made some significant size reductions: compacted 'gRbase-arrays.pdf' from 421K...

Dear fellow R-users I've always used Prof Harrell's rms package to calculate/visualize partial R2 values from a standard regression analysis (below is a quick example on how I've done so). Recently, I calcuated partial R2 values using the ppcor and gRbase packages. As it turns out, ppcor and gRbase agree with each other but the values generated from these packages tended to be greater than those generated by the rms package. Has anyone encountered a similar situation like mine? Yonghao ++++++++++++++++++++++++++++++++++++ f <- ols(y ~ x1 + x2...

I am sure that I do not have the answer to your question - but I would like to add to your views regarding the S4-issue. I've been involved in the gRbase package for graphical modelling in R. The first version was implemented in S4 but now we have made a roll-back to using S3 methods. While, I can see that S3 is not really comprehensive enough for 'proper' object oriented programming it certainly has other virtues. One such is the documen...

This is a 'rather than re-invent the wheel' post. Has anyone out there re-written combn so that it can be parallelized - with multicore, snow, or otherwise? I have a job that requires large numbers of combinations, and rather than get all of the index values, then crank it through mclapply, I was wondering if there was a way to just do this natively within a function. Just curious.

With R 2.4.0 around the corner, I intend to resume the usual process of providing beta snapshot packages in Debian unstable. By updating them before they hit 'testing', we give ourselves a nice window in which we can update the packages as needed so that once 2.4.0 comes out for good on October 3, we should be in good shape. But how can I effectively manage this? Running $ apt-cache

CRAN (and crantastic) updates this week New packages ------------ * Bergm (1.0) Alberto Caimo http://crantastic.org/packages/Bergm Functions implementing Bayesian estimation for exponential random graph models via exchange algorithm Updated packages ---------------- lmtest (0.9-26), logcondens (1.3.5), MTSKNN (0.0-4), pmml (1.2.21), r2lUniv (0.9.4), rattle (2.5.11), rgdal (0.6-23),

An extensive set of changes to the methods package has been committed today to allow non-exported classes from packages with namespaces (and some related fixes in dealing with generic functions from namespaces as well). The namespace mechanism requires packages to export any class definitions that are part of the API. Unfortunately, NOT exporting classes has never really worked. The problem was

...quot;gld","gllm","glmmML","glmpath","glpk","gmodels","gmp","gmt","gnm","GPArotation","gpclib","gplots","gpls","graphics","grasper","GRASS","gRbase","grDevices","gregmisc","grid","gridBase","grnnR","grouped","GroupSeq","gss","gstat","gsubfn","gtools","hapassoc","haplo.ccs","haplo.stats","hapsim&q...

...), extremevalues (2.0), far (0.6-3), farmR (1.1), FD (1.0-7), flashClust (1.00), flexmix (2.2-5), fmri (1.4-0), forensim (1.1-4), FrF2 (1.1), ftsa (1.5), fxregime (1.0-0), GAMens (1.1.1), gcExplorer (0.9-3), GEOmap (1.5-4), GeoXp (1.4.2), GeoXp (1.4.3), ggplot2 (0.8.7), gmt (1.1-4), gRapHD (0.1.6), gRbase (1.3.4), gsDesign (2.2-11), gstat (0.9-69), gWidgetsRGtk2 (0.0-62), gWidgetstcltk (0.0-31), helloJavaWorld (0.0-7), hergm (1.1-1), HiddenMarkov (1.3-1), hyperdirichlet (1.4-2), ibr (1.2.1), ic.infer (1.1-3), Imap (1.32), integrativeME (1.2), integrOmics (2.55), interval (0.9-9.6), ipw (1.0-4), kml...