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Yes, keep the $(lsb-release -cs) there. This allows you to change the version of the OS without having to change anything else (for instance we are migrating all of our docker to 24.04 LTS right now, so we only have to modify the FROM entry and all of our Dockerfile will still work). From: Gerber, Lauren J <lauren.gerber at helsinki.fi> Date: Thursday, July 11, 2024 at 2:21?AM To:

Hello, I have a network issue in dom0; I''m not sure if it''s a configuration problem or a design problem in my setup. My setup: The server (dom0) runs Ubuntu 7.10, Xen was installed using apt-get (means version: Xen 3.10, Kernel 2.6.22-14). This server has 4 NICs. I use bridged networking with my own script which creates 4 bridges ("$dir/network-bridge"

Hi Marco, Thank you for the follow up email. In the line below, do I replace $(lsb-release -cs) with jammy (Ubuntu 22.04) or leave it alone: Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/? It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects. Br, Lauren -- Lauren J. Gerber

And sorry for the spam, but I meant to say that the Dockerfile is basically following the steps from https://cloud.r-project.org/bin/linux/ubuntu/ as Lauren was trying to do but start by installing the pre-requisites needed to deploy the r-base package on a Ubuntu 22.04 Docker image (which is NOT a base 22.04 but a minimally striped version of 22.04). From: marcoblanchette at icloud.com

Dear Colleagues, I have x, y data (pollen and seed dispersal from oaks !) that I would like to fit with a function which look like this: p(a,b,x,y)=b/(2*pi*a?gamma(2/b))*exp(-(square_root(x?+y?)/a)power(b)) I am looking for a and b values that fit my data at best. Can someone give me hints to perform such an analysis with R ? Thanks a lot Sophie Sophie Gerber

Lauren, little oversight from my Dockerfile, if you want to follow the CRAN steps and get the R from the cloud.r-project.org server, you want to replace && add-apt-repository -y "ppa:marutter/rrutter4.0" With && add-apt-repository "deb https://cloud.r-project.org/bin/linux/ubuntu $(lsb_release -cs)-cran40/" The ppa repo is Michael Rutter personal repo

Hi All, I want to select a level of a factor variable from a dataset. I have the folowing data: dataset: use factor: month (use$month, levels=February, July) > use[1:5,] month registration use department size 1 February KKG151GP Y Safety 1.6 To select February I tried: > use[use$month=="February"] Error in "[.data.frame"(use, use$month ==

Lauren, On 15 October 2024 at 13:51, Gerber, Lauren J wrote: | I just tried fixing my script and added library(BiocManager) before library | (ggbreak), then rebuilt the image, and am still getting the same error. You need _two_ distinct commands. First install.packages("BiocManager") and second once that is done use it to install 'ggbreak' from BioConductor

Oh, again, sorry for the spam but the problem Lauren is seeing is when she is trying to sign the key. Installing gnugpg usually takes care of that problem. From: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Date: Monday, July 8, 2024 at 12:26?PM To: Dirk Eddelbuettel <edd at debian.org> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at

Hmm? It?s picking up the pre-made binary from ppa:marutter/rrutter4.0 using apt-get install. Isn?t it what Lauren?s trying to do? From: Dirk Eddelbuettel <edd at debian.org> Date: Monday, July 8, 2024 at 11:57?AM To: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian

Hi Dirk, Thank you so much for looking into this when you got home. I greatly appreciate it. I was actually in the midst of writing to everyone the following message: ?. ?. ?. Hi All, I have some good news. ? My docker image is now up-to-date with R version 4.4.1. I first had to clear a bunch of unused data using docker system prune ?force. Apparently, it cleared over 32.53 gigs of data, and

Earlier today I sent a question to Frank Harrell as an R developer with whom I am most familiar. He suggested also that I put my questions to the list for additional responses. Next month I'll be giving a talk on R as an example of high quality open source software. I think there is much to learn from R as a high quality extensible product that (at least as far as I can tell) has never

Hi James, I just tried fixing my script and added library(BiocManager) before library(ggbreak), then rebuilt the image, and am still getting the same error. Error in library(ggbreak) : there is no package called 'ggbreak' Execution halted I will say that when I ran docker exec docker_container_id R -e "installed.packages()" I get the following: Package

Don't you have to load BiocManager before using it? -----Original Message----- From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> On Behalf Of Gerber, Lauren J Sent: Tuesday, October 15, 2024 9:15 AM To: r-sig-debian at r-project.org Cc: dirk at eddelbuettel.com Subject: Re: [R-sig-Debian] R Package: 'ggbreak' in Dockerfile Hi All, Does anyone have experience

Hi All, Does anyone have experience successfully installing and loading the R package ?ggbreak? in a Docker container? I ask because I have successfully used the ?ggbreak? package in a script outside the Docker container (on my local computer), but for some reason, I get the following error message when trying to load it using library(ggbreak) or library(?ggbreak?) inside the same script that

I am trying to print out a list of strings of length 11 based on integers 0 through 10. The rules as given to me for the ordering are: The first digit must be 0. The 2nd digit must be 0 or 1. The 3rd digit must equal the 2nd digit or the 2nd digit +1. ... Given the final digit, n, all digits 0 through n must appear in a given sequence. So the final 1024 item list should look like 0 1 2 3 4 5

Hi Dirk and Marco, I need to test some of the suggested solutions and circle back here. Thank you so much for your help. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U,

Hi I tried to customize help(), so it starts the compiled html help, and searches in all packages. I wrote the following function: > my.help function(topic){ help(topic, package=.packages(all=T), lib.loc=.lib.loc, chmhelp=T) } When I use it with >my.help(help) give the following error: Error in help(topic, package = .packages(all = T), lib.loc = .lib.loc, : No documentation

I am wondering if anyone knows how to change or rotate the default axes on a 3D scatterplot. I would like to change which sides of the cube the 3 axes are displayed on. Many thanks, Leah Gerber [[alternative HTML version deleted]]

Is it better to start Samba using in initd, or to use the script, much like the one provided by SuSE. ?? so far I have used the script, but I don't like the fact of having to start samba manually. I would much prefer to see it run as a service. just to confirm all it really involves is starting smbd and nmbd Rowan [TSS] Gerber Scientific Products http://www.gspinc.com