search for: gerber

Yes, keep the $(lsb-release -cs) there. This allows you to change the version of the OS without having to change anything else (for instance we are migrating all of our docker to 24.04 LTS right now, so we only have to modify the FROM entry and all of our Dockerfile will still work). From: Gerber, Lauren J <lauren.gerber at helsinki.fi> Date: Thursday, July 11, 2024 at 2:21?AM To: marcoblanchette at icloud.com <marcoblanchette at icloud.com>, Dirk Eddelbuettel <edd at debian.org> Cc: Dirk Eddelbuettel <edd at debian.org>, r-sig-debian at r-project.org <r-sig-debia...

Hello, I have a network issue in dom0; I''m not sure if it''s a configuration problem or a design problem in my setup. My setup: The server (dom0) runs Ubuntu 7.10, Xen was installed using apt-get (means version: Xen 3.10, Kernel 2.6.22-14). This server has 4 NICs. I use bridged networking with my own script which creates 4 bridges ("$dir/network-bridge"

...e -cs) with jammy (Ubuntu 22.04) or leave it alone: Add-apt-repository ?deb https://cloud.r-project.org/bin/linux/ubuntu jammy-cran40/? It?s good to know about installations for Bioconductor. I am not currently using it, but I may need it in the future for other projects. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8) FI-00014 University...

...d to deploy the r-base package on a Ubuntu 22.04 Docker image (which is NOT a base 22.04 but a minimally striped version of 22.04). From: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Date: Monday, July 8, 2024 at 12:21?PM To: Dirk Eddelbuettel <edd at debian.org> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian at r-project.org> Subject: Re: [R-sig-Debian] Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image Hmm? It?s picking up the pre-made binary from ppa:marutter/rrutte...

...aks !) that I would like to fit with a function which look like this: p(a,b,x,y)=b/(2*pi*a?gamma(2/b))*exp(-(square_root(x?+y?)/a)power(b)) I am looking for a and b values that fit my data at best. Can someone give me hints to perform such an analysis with R ? Thanks a lot Sophie Sophie Gerber gerber at pierroton.inra.fr INRA - UMR BIOGECO 69 route d'Arcachon tel (33) (0)5 57 12 28 30 33612 Cestas cedex fax (33) (0)5 57 12 28 81 http://www.pierroton.inra.fr/genetics/Perso/Sophie/ page_sophie_english.ht...

...amp; rm -rf /var/lib/apt/lists/* /tmp/* ## Configure parallel options to use max CPUs by default and install BioC RUN /usr/bin/R -e 'options(Ncpus = parallel::detectCores())'\ -e 'install.packages("BiocManager")' \ -e 'BiocManager::install()' Marco From: Gerber, Lauren J <lauren.gerber at helsinki.fi> Date: Wednesday, July 10, 2024 at 9:43?AM To: Dirk Eddelbuettel <edd at debian.org> Cc: Dirk Eddelbuettel <edd at debian.org>, marcoblanchette at icloud.com <marcoblanchette at icloud.com>, r-sig-debian at r-project.org <r-sig-debi...

...r in "[.data.frame"(use, use$month == levels(use$month)[1]) : undefined columns selected It seems if a logical variable is created, and the subsetting on a factor variable won't work directly.(It works directly for numeric variables) Can anyone help please. Regards Hennie Gerber Hennie Gerber Statistician UNISA - Research Support + 27 12 429 3188 Waarskuwing! Die sienings uitgespreek is my eie en nie noodwendig my werkgewer sin nie Warning! All views expressed are my own and not necessarily that of my employer. -------------------------------------------------...

Lauren, On 15 October 2024 at 13:51, Gerber, Lauren J wrote: | I just tried fixing my script and added library(BiocManager) before library | (ggbreak), then rebuilt the image, and am still getting the same error. You need _two_ distinct commands. First install.packages("BiocManager") and second once that is done use it to in...

...e spam but the problem Lauren is seeing is when she is trying to sign the key. Installing gnugpg usually takes care of that problem. From: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Date: Monday, July 8, 2024 at 12:26?PM To: Dirk Eddelbuettel <edd at debian.org> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian at r-project.org> Subject: Re: [R-sig-Debian] Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image And sorry for the spam, but I meant to say that the Dockerfile is...

Hmm? It?s picking up the pre-made binary from ppa:marutter/rrutter4.0 using apt-get install. Isn?t it what Lauren?s trying to do? From: Dirk Eddelbuettel <edd at debian.org> Date: Monday, July 8, 2024 at 11:57?AM To: marcoblanchette at icloud.com <marcoblanchette at icloud.com> Cc: Gerber, Lauren J <lauren.gerber at helsinki.fi>, r-sig-debian at r-project.org <r-sig-debian at r-project.org> Subject: Re: [R-sig-Debian] Issues with Ubuntu 22.04 and Installing the Latest Version of R (R 4.4.1) to Docker Image On 8 July 2024 at 16:37, marcoblanchette at icloud.com wrote: |...

...ocker image in interactive mode to check it and it worked ?: /# apt-cache policy r-base-core r-base-core: Installed: 4.4.1-1.2204.0 Candidate: 4.4.1-1.2204.0 Version table: *** 4.4.1-1.2204.0 100 100 /var/lib/dpkg/status This is great. Thank you all so much. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8) FI-00014 University...

...e the most is why is R as an open source project is so incredibly successful and other projects, say for example, Octave don't enjoy that level of success? I have some ideas of course, but I would really like to know your thoughts when you look at R from such a vantage point. Thanks. Kathy Gerber University of Virginia ITC - Research Computing Support

...t;tools" "/usr/lib/R/library" "4.4.1" utils "utils" "/usr/lib/R/library" "4.4.1" As you can see, ggbreak is not there. Please let me know if you have any additional thoughts. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8) FI-00014 University...

Don't you have to load BiocManager before using it? -----Original Message----- From: R-SIG-Debian <r-sig-debian-bounces at r-project.org> On Behalf Of Gerber, Lauren J Sent: Tuesday, October 15, 2024 9:15 AM To: r-sig-debian at r-project.org Cc: dirk at eddelbuettel.com Subject: Re: [R-sig-Debian] R Package: 'ggbreak' in Dockerfile Hi All, Does anyone have experience successfully installing and loading the R package ggbreak in a Docker conta...

..."param10", "param11", "param12", "param13", "param14", "param15", "param16", "param17", "param18", "param19"] Would you please advise? Thank you in advance for your help. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8) FI-00014 University...

...1) { a <- c(1:b[1,ptn]) for (k in 1:length(dss)) { a <- c(a,rep(comb[k, i], u[k, ptn])) } cat(sort(a-1,"\n") } } } I appreciate any insight or direction. "Counting is hard." -- Alan Lee Schwartz ----------------------------------------------------- Kathy Gerber University of Virginia Research Computing Lab

Hi Dirk and Marco, I need to test some of the suggested solutions and circle back here. Thank you so much for your help. Br, Lauren -- Lauren J. Gerber Bioinformatician Precision Systems Medicine (Kallioniemi) Research Group iCAN ? Digital Precision Cancer Medicine Flagship Institute for Molecular Medicine Finland (FIMM) Nordic EMBL Partnership for Molecular Medicine Biomedicum Helsinki 2U, D301a1 P.O. Box 20 (Tukholmankatu 8) FI-00014 University...

...ve the following error: Error in help(topic, package = .packages(all = T), lib.loc = .lib.loc, : No documentation for `topic' I tried also with > my.help function(x){ help(x,chmhelp)} with the same result. Only doing help(help) is working. Why my function doesn't work? ` Kurt Gerber ******************************************** Kurt Gerber Center for Developement and Environment Institute of Geography University Bern Hallerstrasse 12 3012 Bern phone: +41(0)31 631 40 02 fax: +41(0)31 631 85 44 e-mail: kgerber at giub.unibe.ch www: http://www.cde.unibe.ch ****************...

I am wondering if anyone knows how to change or rotate the default axes on a 3D scatterplot. I would like to change which sides of the cube the 3 axes are displayed on. Many thanks, Leah Gerber [[alternative HTML version deleted]]

...ing in initd, or to use the script, much like the one provided by SuSE. ?? so far I have used the script, but I don't like the fact of having to start samba manually. I would much prefer to see it run as a service. just to confirm all it really involves is starting smbd and nmbd Rowan [TSS] Gerber Scientific Products http://www.gspinc.com