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...;s require()d elsewhere). I'm trying to avoid putting packages in Depends: , so my package loads fast. Any tips of what I'm not understanding properly ? Thanks. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...me was properly processed. Is this a spurious warning ? I'm using: R version 2.13.0 (2011-04-13) Platform: x86_64-unknown-linux-gnu (64-bit) (actually Ubuntu 10.10) -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...eqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...eqLen}{def} \item{do.warn}{abc} \item{...}{xyz} } \details{ Details. } \value{ Text here. } \author{A Person} \examples{ #See the manual } Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ur) }) setMethod("myFun", "character", function(cs, colour = "Red") { cat(cs, colour) }) Thanks for any tips, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...s() ? It doesn't seem to fulfil the claim made by its documentation. The matrix I'm using can be obtained here : http://129.94.136.7/file_dump/dario/iMatrix.obj -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

..., large packages providing ?only? data for examples or vignettes should be listed in ?Suggests? rather than ?Depends? in order to make lean installations possible." -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ics, so that they don't take a long time to load on a slow computer in Adobe Reader, without using external programs outside of R ? Thanks, Dario. ------------------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...und at : http://129.94.136.7/file_dump/dario/all.obj I'm using R version 2.13.0 (2011-04-13) on Platform: x86_64-unknown-linux-gnu (64-bit) and have cluster_1.13.3. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...: 3 Error: no graphics system to unregister > > q("no", runLast = FALSE) Error in q("no", runLast = FALSE) : no graphics system to unregister -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...uot;analyse") } ) setGeneric("analyse") setMethod("analyse", "GRangesList", function(x, y, a, b, c) { x; } ) Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...v_cache/2.11.0/AbsMeth_5/ac047940aaa9cf1a1ec09f1628b13381.RData") > ls() [1] "cacheEnv" "DEPS" "SESSION" What can I try next ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...it appropriate to use 1-p estimated from Kaplan-Meier as the incidence of disease? If not, why not? Regards, Nguyen ____________________________ Nguyen Dinh Nguyen, Bone and Mineral Research Program Garvan Institute of Medical Research St Vincent's Hospital 384 Victoria Street, Darlinghurst Sydney, NSW 2010 Australia Tel; 61-2-9295 8274 Fax: 61-2-9295 8241 E-mail: n.nguyen@garvan.org.au [[alternative HTML version deleted]]

...= TRUE) randData <- lapply(1:4, function(x) sample(10, 10, TRUE)) boxplot(randData, horizontal = TRUE) dev.off() I'm using gridBase_0.4-3. Thanks, Dario. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...ocument this class that I don't own: * checking for missing documentation entries ... WARNING Undocumented S4 classes: AffymetrixCelSet Is this truly necessary ? -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...chmentPlot(samples.list, 300) I have the current 2.13.0 version of R. I'm sure I've done something wrong, I just can't figure out what. Thanks for any help. -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...81 -8.2686 < 2.2e-16 *** #PathologyHyperplasia -1.76627 0.44909 -3.9330 8.389e-05 *** NB. Intensity.over2.hyp.canc is the staining of the core (ie 0 or 1) Pathology is Hyperplasia or Cancer Dr Margaret Gardiner-Garden Garvan Institute of Medical Research 384 Victoria Street Darlinghurst Sydney NSW 2010 Australia Phone: 61 2 9295 8348 Fax: 61 2 9295 8321 [[alternative HTML version deleted]]

...lues and I'm not sure how to go about chosing them. I was wondering if anyone had experience with lmer that might help me with this? Thanks again for any advice you can provide. Regards Marg Dr Margaret Gardiner-Garden Garvan Institute of Medical Research 384 Victoria Street Darlinghurst Sydney NSW 2010 Australia Phone: 61 2 9295 8348 Fax: 61 2 9295 8321 [[alternative HTML version deleted]]

...l example : myplot <- function() { layout(matrix(1:2, nrow=1), widths = c(1, 1)) plot(1:10) plot(10:1) } layout(matrix(1:2), heights = c(1, 2)) myplot() myplot() -------------------------------------- Dario Strbenac Research Assistant Cancer Epigenetics Garvan Institute of Medical Research Darlinghurst NSW 2010 Australia

...it never copies. Any ideas on what I can do to the samba smb.conf or is a MS bug? ___________________________________________________________________ Dr. Gerard Hammond Information Technology Garvan Institute of Medical Research 384 Victoria St. Tel: (02) 9295 8148 Darlinghurst NSW 2010 Fax: (02) 9295 8538 Australia eMail: g.hammond@garvan.unsw.edu.au ___________________________________________________________________ For Garvan Help try: http://www.garvan.unsw.edu.au/ithelp.html "Garvan's covenant distinctly...