search for: ctc

Dear R-helpers, I would like to export hierarchical clusters e.g. fit <- hclust(d, method="ward") in the newick format write(hc2Newick(fit),file='hclust.newick') Searching for a possibility I found this solution in the package ctc (http://www.bioconductor.org/packages/bioc/html/ctc.html). However, neither from this site nor via CRAN it is possible to install the package. Is there any other possibility? Is the package included in any other package? Thanks a lot in advance. With kind regards Johannes -- Project Coordinator...

...xecute INFO: [] webapp=/solr-web path=/update params={} status=500 QTime=118 Dec 31, 2012 4:12:58 AM org.apache.solr.common.SolrException log SEVERE: java.lang.RuntimeException: [was class java.io.CharConversionException] Invalid UTF-8 start byte 0xf8 (at char #483989, byte #532382) at com.ctc.wstx.util.ExceptionUtil.throwRuntimeException(ExceptionUtil.java:18) at com.ctc.wstx.sr.StreamScanner.throwLazyError(StreamScanner.java:731) at com.ctc.wstx.sr.BasicStreamReader.safeFinishToken(BasicStreamReader.java:3657) at com.ctc.wstx.sr.BasicStreamReader.getText(BasicSt...

...com returns zero results. Searching for those keywords at http://r-project.markmail.org/ does not return helpful discussions. Here's my data: seqs <- c("","G","C","CCC","T","","TTCCT","","C","CTC") Some sequences are missing, so they're blank `""`. I have a function for calculating GC content: > GC <- function(s) { if (!is.character(s)) return(NA) n <- nchar(s) if (n == 0) return(NA) m <- gregexpr('[GCSgcs]', s)[[...

...e.coyote.http11.Http11Processor.process(Http11Processor.java:859) at org.apache.coyote.http11.Http11Protocol$Http11ConnectionHandler.process(Http11Protocol.java:602) at org.apache.tomcat.util.net.JIoEndpoint$Worker.run(JIoEndpoint.java:489) at java.lang.Thread.run(Thread.java:722) Caused by: com.ctc.wstx.exc.WstxIOException: Invalid UTF-8 start byte 0xfc (at char #25214836, byte #26687495) at com.ctc.wstx.sr.StreamScanner.constructFromIOE(StreamScanner.java:625) at com.ctc.wstx.sr.StreamScanner.loadMore(StreamScanner.java:994) at com.ctc.wstx.sr.StreamScanner.getNext(StreamScanner.java:754)...

We''ve seen this question a lot lately, so I''ve just added it to the FAQ. It''s currently section 5.3. http://wiki.xensource.com/xenwiki/XenFaq#head-4f9c83e35d885a98c082f7e30bc25a11429e0c96 or http://tinyurl.com/3bdhbb It''s my first post to the Wiki, so please let me know if you''ve got any corrections, advice, screaming insults... please let me

...###################### IMPORTANT NOTICE: This e-mail and any attachment to it are intended only to be read or used by the named addressee. It is confidential and may contain legally privileged information. No confidentiality or privilege is waived or lost by any mistaken transmission to you. The CTC is not responsible for any unauthorised alterations to this e-mail or attachment to it. Views expressed in this message are those of the individual sender, and are not necessarily the views of the CTC. If you receive this e-mail in error, please immediately delete it and notify the sender. You mu...

Hey all, I am running a Asterisk 1.2.9.1 with Sangoma A101 card, newest firmware, configured with a help from Sangoma Tech Support, running fine. It is connected to a PRI circuit split from Cisco MC 3810, which in turn is connected to a Converged T from CTC Communications. While Asterisk works fine and I can call in/out on my BV account, I am only able to dial in through CTC. I have spent last 4 days researching the issue and here is what it boils down to: 1. The Asterisk box sends 809083 as bearer capabilities while the other side expects 809082...

I am trying to setup Samba in a classroom so that a student's samba folder can be accessed via Windows by the student and the teacher. I have Samba working, but can only get the student access to the folder. How can I add another user or group to Samba so the teacher and student have full control over the folder? Thanks Tom

Hello, I have configured puppet and puppetdb (storeconfig) with postgresql and the service run and the collecting are good for example: I can make query with the next command and responds ok . [.........................] [root@master]# curl -X GET -H ''Accept: application/json'' http://127.0.0.1:8080/v2/facts --data-urlencode ''query=["=", "name",

Dear R-users, I would like to use Cluster 3.0 for my data because of its zooming, link out and copy (gene)labels into clipboard options. Unfortunately the program doesnt allow use of the distance metrics I would like to use. I would like to ask if there is some library, that allows saving dendrogram object in the format readable by Cluster. Thank you for reply. --

Hi, I'm doing hierarchical clustering, and want to export my dendrogram to a tree-viewing/editing software. I can do this by converting the data to Newick format (hc2Newick in ctc package), but I can't get branch lengths to show in the resulting phylogram. I figured it might help to convert my hclust object into a phylo object (as.phylo in ape package), but the following lines give me this "Error in UseMethod("as.phylo") : no applicable method for 'as....

...for *Ruby on Rails* profiles. *Requirement categories.* Developer Software Engineer Sr.Software Engineer Tech Lead Project Lead *Location* Gurgaon *Client* Savience Intellinet System If you are looking for job change kindly revert back with your updated cv and below mentioned details: Current CTC Expected CTC Notice Period Reason for change Thanks & Regards, Anup Pathak Manager - Business Development | Winfoglobal Technologies Pvt.Ltd. #2331/B , 17th cross , 1st sector , HSR Layout , Bangalore -560102. Call : +91-9015128782 | 080-22580169 | 080-22580269 www.winfoglobal.com | anup.p...

...puppetdb | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =Tc/puppetdb : puppetdb=C*T*c*/puppetdb template0 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres : postgres=CTc/postgres template1 | postgres | UTF8 | en_US.UTF-8 | en_US.UTF-8 | =c/postgres : postgres=CTc/postgres (4 rows) puppetdb=> \du List of roles Role name | Attributes | Member of -----------+-------------+-----------...

Hi R helpers... I am having troubles because of the discrepancy between the dendrogram plotted from hclust and what is wrote in the hc2Newick file. I've got a matrix C: > hc <- hclust(dist(C)) > plot(hc) with the: > write(hc2Newick(hc),file='test.newick') both things draw completely different "trees"... I have also tried with the raw distance matrix D and

...he chains are below the clusters X bits value, or is it only a problem when all of the Contig values for a -single- chain are below the cluster X bits value? Any pointers on valid interpretation of the output is appreciated. -Norm -- Norman Joseph, Senior System Engineer joseph at ctc.com Concurrent Technologies Corporation 814.269.2633 Information Systems Management Office (ISMO) ------------------------------------------------------------ This message and any files transmitted within are intended solely for the addressee or its representative and may contain...

Last week someone in my localnetwork "abused" from our link, making everything slow... So I want to put the current Linux router as a traffic shaper. The setup is: +--- 128Kbit | "International" Local net --- [Linux router with ] -- ISP -- [magic routers]

...gata" and then i perform an RSCU analysis on it... > uco(newdata5,index="rscu") aaa aac aag aat aca acc acg act aga agc agg agt ata atc atg att caa cac cag cat NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA cca ccc ccg cct cga cgc cgg cgt cta ctc ctg ctt gaa gac gag gat gca gcc gcg gct NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA gga ggc ggg ggt gta gtc gtg gtt taa tac tag tat tca tcc tcg tct tga tgc tgg tgt NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA NA tta ttc ttg ttt...

I have (below) an attempt at an R script to find the limit distribution of a continuous-time Markov process, using the formulae outlined at http://www.uwm.edu/~ziyu/ctc.pdf, page 5. First, is there a better exposition of a practical algorithm for doing this? I have not found an R package that does this specifically, nor anything on the web. Second, the script below will give the right answer, _if_ I "normalize" the rate matrix, so that the average r...

...nate the activities of a team providing state of the art analysis of high throughput genomics data. Clinical and Experimental Pharmacology Group (CEP) - Caroline Dive ===================================================== Bioinformatician: We are now able to isolate single Circulating Tumour Cells (CTCs) from patients? blood samples and derive their genomic profiles utilising next generation sequencing (Hodgkinson et al Nature Medicine, June 2014). We will for the first time using advanced molecular analysis define CTC heterogeneity and examine differences in CTC genomic profiles of small cell lu...

I have a couple of Windows Vista Computers that i freshly (re)installed, updated to SP2 + all updates, and joined to my domain... i also got an empty profile on the server (the storage folder is there, but there are no files inside) When i log into the domain Windows creates all files and folders just fine and stores a cache of that profile in c:\users\username (like it should), And when i log