search for: clustalw

Hi, I'm using the function clustalw in packages dna, but every time i have a segmentation fault! In your opinion What is the problem?Memory? Please help me!!!! Daniela

...static libraries are copied to src/, and finally the static libraries are integrated into msa.so. The Makevars file looks as follows: PKG_LIBS=`${R_HOME}/bin${R_ARCH_BIN}/Rscript -e "if (Sys.info()['sysname'] == 'Darwin') cat('-Wl,-all_load ./libgc.a ./libClustalW.a ./libClustalOmega.a ./libMuscle.a') else cat('-Wl,--whole-archive ./libgc.a ./libClustalW.a ./libClustalOmega.a ./libMuscle.a -Wl,--no-whole-archive')"` PKG_CXXFLAGS=-I"./gc-7.2/include" -I"./Muscle/" -I"./ClustalW/src" -I"....

...of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align.html o An undocumented behavior was reported by Guy Perriere for uco() when computing RSCU on sequences where an amino-acid is missi...

...of a protein is now available. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/pmw.html o A new function reverse.align() contributed by Anamaria Necsulea is now available to align CDS at the protein level and then reverse translate this at the nucleic acid level from a clustalw output. This can be done on the fly if clustalw is available on your platform. http://pbil.univ-lyon1.fr/software/SeqinR/SEQINR_CRAN/DOC/html/reverse.align.html o An undocumented behavior was reported by Guy Perriere for uco() when computing RSCU on sequences where an amino-acid is missi...

...CRAN packages ] ), ESS editing in Emacs/XEmacs, GGobi visualization, Rpad webinterface, and initial support for the RKward GUI; - even stronger bioinformatics/biology support than before: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, calc, euler, gap, giac, mathomatic, maxima, pa...

...CRAN packages ] ), ESS editing in Emacs/XEmacs, GGobi visualization, Rpad webinterface, and initial support for the RKward GUI; - even stronger bioinformatics/biology support than before: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, calc, euler, gap, giac, mathomatic, maxima, pa...

...lization, Rpad webinterface, the award winning JGR 'Java GUI for R', RSPerl, Rserve, an early release of the RKward GUI and more. - continued strong bioinformatics/biology support: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, ImageJ, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, calc, euler, gap, giac, mathomatic, ma...

...lization, Rpad webinterface, the award winning JGR 'Java GUI for R', RSPerl, Rserve, an early release of the RKward GUI and more. - continued strong bioinformatics/biology support: BioConductor, arb, biofox, bioperl, biopython, blast2, boxshade, bugsx, clustalw, fastdnaml, fastlink, garlic, gromacs, hmmer, loki, mipe, molphy, muscle, ncbi, phylip, rasmol, readseq, seaview, t-coffee, textopo, ImageJ, and more; - continued strong mathematics / computational algrebra support: axiom, blacs, calc, euler, gap, giac, mathomatic, ma...