search for: clustal

...argins are not there, have the plot take up more of the plotting region. Below is an example of one of the trees. cat("(((((R3:500.0,R4:500.0):439.0,L._amplexicaule:500.0):494.8,((W4:500.0,R1:500.0):499.0, W2:500.0):500.0):495.8,(W5:500.0,R2:500.0):491.8):500.0,W1:500.0);", file = "clustal.tre", sep = "\n") clustal.tree4 <- read.tree("clustal.tre") plot(clustal.tree4, type="unrooted", no.margin=TRUE, font=c(1,1,3,1,1,1,1,1,1)) unlink("clustal.tre") text.lab < -c(99.2,99.0,87.8,100.0,99.8,98.4) node.lab <- c(3:8) nodelabels(text=t...

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and challenging statistical problems in current molecular biology and I am hoping that making these procedures available to the R community will encourage peop...

I have just placed version 0.2 alpha of my library, dna, on my web page at www.luc.ac.be/~jlindsey/rcode.html The R functions in this library cover most of the basic methods of dna and protein sequence analysis. The library includes ports of CLUSTAL W for multiple sequence alignment and flip for finding open reading frames in a dna sequence. There are an enormous number of interesting and challenging statistical problems in current molecular biology and I am hoping that making these procedures available to the R community will encourage peop...

Hello everyone, I am not sure if this should go on the general R mailing list (for example, if there is a text mining solution that might work here) or the bioconductor mailing list (since I wasn't able to find a solution to my question on searching their lists) - so this time I tried both, and in the future I'll know better (in case it should go to only one of the two). The task