search for: chmfactor

...GNU make for building the package ** libs ** arch - gcc -m32 -std=gnu99 -I/usr/include/R -I/usr/local/include -I./UFconfig -fpic -O2 -g -pipe -Wall -Wp,-D_FORTIFY_SOURCE=2 -fexceptions -fstack-protector --param=ssp-buffer-size=4 -m32 -march=i386 -mtune=generic -fasynchronous-unwind-tables -c CHMfactor.c -o CHMfactor.o In file included from CHMfactor.h:4, from CHMfactor.c:2: Mutils.h:9:41: error: R.h: No such file or directory Mutils.h:10:22: error: Rversion.h: No such file or directory Mutils.h:11:56: error: Rdefines.h: No such file or directory In file included from CHMfactor.h...

...; successfully unpacked and MD5 sums checked ** libs make[3]: Entering directory `/state/partition1/tmp/RtmpCw7v7G/R.INSTALL3227fa892a3/Matrix/src' mpicc -I/home/tbarik/src/R-3.1.1/include -DNDEBUG -DNTIMER -I./SuiteSparse_config -I/usr/local/incl ude -fpic -I/home/tbarik/include -c CHMfactor.c -o CHMfactor.o In file included from CHMfactor.h:4, from CHMfactor.c:2: Mutils.h: In function 'inv_permutation': Mutils.h:270: error: 'for' loop initial declaration used outside C99 mode In file included from Mutils.h:374, from CHMfactor.h:4,...

...R-2.8.1 using the current pgi compiler (8.0.2) for AMD64 on a SLES9 system. When I try to install "Matrix" everything is fine until the last step. make[1]: Leaving directory `/tmp/R.INSTALL.TW3399/Matrix/src/AMD' pgCC -L/usr/lib64 -L/usr/X11R6/lib64 -pgf90libs -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o SPQR.a CHOLMOD...

...n SPARC Solaris 10. Compiler used is solstudio12.2. Attached is the configure script. I then tried to install a recommended package called Matrix. The compilation failed with the following messages, ....... CC -library=stlport4 -G -L/opt/csw/lib/sparcv9 -L/opt/solstudio12.2/prod/lib/v9 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o abIndex.o CHOLMOD....

...me/sdb231/R/Matrix' SECOND KIND OF ERROR, USING 'GMAKE': ces-409034-sdb231: R CMD INSTALL -l ~/R Matrix_0.999375-4.tar.gz * Installing *source* package 'Matrix' ... ** libs ** arch - cc -I/usr/local/R-2.7.1/lib/R/include -I/usr/local/include -I./UFconfig -g -c CHMfactor.c -o CHMfactor.o /usr/ucb/cc: language optional software package not installed gmake: *** [CHMfactor.o] Error 1 ERROR: compilation failed for package 'Matrix' ** Removing '/home/sdb231/R/Matrix'

...g compilation when updating. Looks like the path given in gcc? -I"C:/PROGRA~1/R/R-42~1.3/include" -DNDEBUG -DNTIMER -I./SuiteSparse_config -DUSE_FC_LEN_T -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"???? -O2 -Wall? -std=gnu99 -mfpmath=sse -msse2 -mstackrealign? -c CHMfactor.c -o CHMfactor.o /bin/sh: line 1: gcc: command not found points to rtools42 by defaut I have fixed the issue changing the folder name rtools43 into rtools42, but I wonder wether this is recommandable... [[alternative HTML version deleted]]

...age. At this point the following break occured: ------------------------------------------------ begin installing recommended package Matrix * Installing *source* package 'Matrix' ... ** libs gcc -std=gnu99 -I/usr/local/R-devel/include -I./UFconfig -I/usr/local/include -fpic -g -O2 -c CHMfactor.c -o CHMfactor.o [..snip..] gcc -std=gnu99 -I/usr/local/R-devel/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -c colamd_global.c -o colamd_global.o gcc -std=gnu99 -I/usr/local/R-devel/include -I../Include -I../../UFconfig -I/usr/local/include -fpic -g -O2 -I../I...

...utput file from building R 2.10.0 on RedHat Linux. I have never previously experienced any problems when building R from source with new releases. But, now I get a compile error with the Matrix package: CHOLMOD/Include/cholmod.h:87:22: error: UFconfig.h: No such file or directory make[3]: *** [CHMfactor.o] Error 1 make[3]: Leaving directory `/tmp/RtmppKsKKl/R.INSTALL327b23c6/Matrix/src' ERROR: compilation failed for package 'Matrix' Any help or suggestions would be appreciated. I am simply doing this, as I always have: ./configure --prefix=/Local/install/location (I can not use the...

..._super_solve.o] ld: Unsatisfied symbol "dgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "main" in file <no file> ld: Unsatisfied symbol "alloca" in file CHMfactor.o ld: Unsatisfied symbol "dpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dsyrk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dtrsm&qu...

...rything worked fine and R-devel runs, with the exception of package Matrix where compilation crashes with the following message. The error occurs during building of the recommended packages and also if Matrix is compiled separately: [...] CC -G -lCstd -L/opt/sun/sunstudio12/lib/amd64 -o Matrix.so CHMfactor.o Csparse.o TMatrix_as.o Tsparse.o init.o Mutils.o chm_common.o cs.o cs_utils.o dense.o dgCMatrix.o dgTMatrix.o dgeMatrix.o dpoMatrix.o dppMatrix.o dsCMatrix.o dsyMatrix.o dspMatrix.o dtCMatrix.o dtTMatrix.o dtrMatrix.o dtpMatrix.o factorizations.o ldense.o lgCMatrix.o sparseQR.o CHOLMOD.a COLAMD.a...

..._super_solve.o] ld: Unsatisfied symbol "dgemm" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dgemv" in file CHOLMOD.a[cholmod_l_super_solve.o] ld: Unsatisfied symbol "main" in file <no file> ld: Unsatisfied symbol "alloca" in file CHMfactor.o ld: Unsatisfied symbol "dpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "zpotrf" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dsyrk" in file CHOLMOD.a[cholmod_l_super_numeric.o] ld: Unsatisfied symbol "dtrsm&qu...

...================================== downloaded 1.9 Mb * Installing *source* package 'Matrix' ... ** libs cc -m64 -I/home/choid/bin/R281/lib/R/include -I./UFconfig -I/usr/local/include -I/opt/SUNWspro/prod/include -I/usr/include -I/usr/sfw/include -KPIC -O -I/opt/SUNWspro/prod/include -c CHMfactor.c -o CHMfactor.o cc -m64 -I/home/choid/bin/R281/lib/R/include -I./UFconfig -I/usr/local/include -I/opt/SUNWspro/prod/include -I/usr/include -I/usr/sfw/include -KPIC -O -I/opt/SUNWspro/prod/include -c Csparse.c -o Csparse.o cc -m64 -I/home/choid/bin/R281/lib/R/include -I./UFconfig -I/usr/local/i...

The bulk is on my forums - the final post for today is: Results to date: A. It looks like I am going to need a newer compiler for C - xlc/xlC V11 apparently does not understand this code: "/data/prj/cran/R-3.2.3/src/main/memory.c", line 2149.31: 1506-046 (S) Syntax error. I will have to check if R-devel has different code before asking for assistence. +2139 #ifdef