search for: cattarino

...s 0.28): [[2]] [1] 0.28 0.45 0.59 0.69 0.80 0.87 0.95 0.94 0.98 and the position of course 2. I am looking for the index because I would like to subset the list afterwards (e.g. mylist[[2]]) and extract that element (i.e. the whole vector). Thanks for your help Lorenzo Lorenzo Cattarino PhD Candidate (Confirmed) Landscape Ecology and Conservation Group Centre for Spatial Environmental Research School of Geography, Planning and Environmental Management The University of Queensland Brisbane, Queensland, 4072, Australia Telephone 61-7-3365 4370, Mobile 0410884610 Email l.c...

...ot; "1.7.2b" "1.7.2x1" "1.9.1a" How can I remove from each record everything that is after the number after the second dot? E.g.: 1.11.2a becomes 1.11.2, 1.12.1x4 becomes 1.12.1, 1.9.1a becomes 1.9.1...and so forth. Thanks Lorenzo Lorenzo Cattarino PhD Candidate (Confirmed) Landscape Ecology and Conservation Group Centre for Spatial Environmental Research School of Geography, Planning and Environmental Management The University of Queensland Brisbane, Queensland, 4072, Australia Telephone 61-7-3365 4370, Mobile 0410884610 Email l.c...

Hi r-users, I have a matrix B and a list of 3x3 matrices (mylist). I want to calculate the quantiles in the list using each of the value of B as probabilities. The codes I wrote are: B <- matrix (runif(12, 0, 1), 3, 4) mylist <- lapply(mylist, function(x) {matrix (rnorm(9), 3, 3)}) for (i in 1:length(B)) { quant <- lapply (mylist, quantile, probs=B[i]) } But quant

Hi R-users I would like to extract the random effects ("1|SITE", "1+SPECIES|SITE" and "BA|SITE") from this model formula: Full_model <- formula (VAR ~ (1|SITE) + (1+SPECIES|SITE) + (BA|SITE) + HEIGHT + COND + NN_DIST) I tried: terms(Full_model) labels(terms(Full_model)) but I could not distinguish between random and fixed effects. thanks

...A NA [8,] NA NA NA [9,] NA NA NA [10,] NA NA NA [11,] NA NA NA [12,] NA NA NA [13,] NA NA NA [14,] NA NA NA [15,] NA NA NA I would like to have just one column with the three groups of five values. Many thanks Lorenzo Lorenzo Cattarino PhD Candidate (Confirmed) Landscape Ecology and Conservation Group Centre for Spatial Environmental Research School of Geography, Planning and Environmental Management The University of Queensland Brisbane, Queensland, 4072, Australia Telephone 61-7-3365 4370, Mobile 0410884610 Email l.c...

I R-users, I am trying to find the way to manipulate a character string to select a 4 digit number after some specific word/s. Example: mytext <- "I do not want the first number 1234, but the second number 5678" Is there any function that allows you to select a certain number of digits (in this case 5678) after a particular word/s (e.g., second number) Thank you for your help

Hi R-users I can not change the name of one column only of my matrix. my_matrix <- matrix (1:12,ncol=3) colnames(my_matrix)[1] <- 'myname' Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent thank you for your help Lorenzo [[alternative HTML version deleted]]

Hi R-users, To automate the creation of scripts, I converted the code (example below) into a character string and wrote the object to a file: Repeat <- " myvec <- c(1:12) cat('vector= ', myvec, '\n') " write (Repeat, 'yourpath/test.R') the problem is that one line of the code is a "cat" command. In the output file (i.e. test.R), the newline

Hi R-users I am having troubles accessing elements after the $ symbol. Reproducible example: >test <- data.frame (first=1:10, second=11:20, third=21:30) >test$first #this works fine but when I try >interest <- "first" >test$interest # does not seem to work Could you tell me why that happens and show how to do instead? Thanks so much Lorenzo

Hi R-users, I would like to create an expression without evaluating it. Then paste that expression to an object. Example: Result <- paste('Result', 1, sep="") paste(Result, substitute(apply(exp.des[1:10,], 1, one.row, parms=parameters)), sep="<-") However this pastes EACH element of the unevaluated expression. Instead I just would like the expression

Hi R users I was wondering on how to use lapply & co when the applied function has a conditional statement and the output is a 'growing' object. See example below: list1 <- list('A','B','C') list2 <- c() myfun <- function(x,list2) { one_elem <- x cat('one_elem= ', one_elem, '\n') random <- sample(1:2,1) show(random)

Hi R users I am trying to run a non linear parameter optimization using the function optim() and I have problems regarding memory allocation. My data are in a dataframe with 9 columns. There are 656100 rows. >head(org_results) comb.id p H1 H2 Range Rep no.steps dist aver.hab.amount 1 1 0.1 0 0 1 100 0 0.2528321

Hi R users I am wondering how I can avoid automatic coercion of my numeric vector elements to character init <- c(age='N', R=as.numeric(0.5), S=as.numeric(0.8)) I have used as.numeric() but it does not seem to work Thank you Lorenzo [[alternative HTML version deleted]]

Hi R users I have these two vectors: Row <- sample(1:25, 10) Col <- sample(1:25, 10) Is there a way to combine them into a list, whose first component is a vector containing the first element of Row and the first element of Col, the second component is a vector containing the second element of Row and the second element of Col, and so on... Thanks you Lorenzo

Hi, I have the following matrix cc <- matrix (1:21, 3) cc[,3:4]<- 0 cc [,1] [,2] [,3] [,4] [,5] [,6] [,7] [1,] 1 4 0 0 13 16 19 [2,] 2 5 0 0 14 17 20 [3,] 3 6 0 0 15 18 21 and I would like to sum just the values in columns 2, 3 and 4, so to have something like 1 4 13 16 19 2 5 14 17 20 3 6 15 18 21

Hi R-users I have a series of matrices and I would like to bind them together by column using a loop (i.e. not writing cbind(matrix1, matrix2,matrix3....)). The reason is because in my real data set I have a very large number of matrices. Example: matrix1 <- matrix (1:12,4,3) matrix2 <- matrix (13:24,4,3) matrix3 <- matrix (25:36,4,3) matrix4 <- matrix (37:48,4,3)

Hi R users, Working from a PC, I am trying to install the spatstat package on a Unix cluster. I created the following PBS file to send a job array: #!/bin/bash -ue #PBS -m ae #PBS -M my email #PBS -J 1-45 #PBS -A my username #PBS -N job name #PBS -l resources #PBS -l walltime cd $PBS_O_WORKDIR module load R/2.14.1 R CMD INSTALL -l /path/to/library spatstat R CMD BATCH

Hi R-users, I have a problem running my R code on a Linux cluster. What I did was write a .pbs file to instruct the cluster on what to do and how: #!/bin/sh #PBS -m ae #PBS -M uqlcatta@uq.edu.au #PBS -A uq-CSER #PBS -N job1_lollo #PBS -l select=1:ncpus=1:NodeType=fast:mem=8GB #PBS -l walltime=999:00:00 cd $PBS_O_WORKDIR source /usr/share/modules/init/bash module

Hi R-users I am trying to use the GAM function of the mgcv package. But I am having problem trying to specify the k parameter. Although I managed to run some models by giving to the parameter some (random) value, and it is explained by Wood (2006) that it does not seem to "really" affect the final result, I would like to grasp better its meaning. I understand that is the

Hi R-users, I am trying to estimate function parameters using optim(). My count observations follows a Poisson like distribution. The problem is that I wanna express the lambda coefficient, in the passion likelihood function, as a linear function of other covariates (and thus of other coefficients). The codes that I am using (except data frame) are the following (FYI the parameters need to be