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...R.basic * checking for file 'R.basic/DESCRIPTION' ... OK * preparing 'R.basic': * checking whether 'INDEX' is up-to-date ... NO * use '--force' to overwrite the existing 'INDEX' * removing junk files * building 'R.basic_0.36.tar.gz' /cygdrive/C/users/braju.com.R/R.basic/R.basic_0.36.tar: No such file or directory TROUBLESHOOTING: Trying to gzip the tar-file manually (using gzip in B. Ripley's Rtools) you get the same error; >gzip /cygdrive/C/users/braju.com.R/R.basic/R.basic_0.36.tar /cygdrive/C/users/braju.com.R/R.basic/R.basic_0.36.tar: N...

...rix discussion group, it suggested that I should posted the question to r-help. Here it goes. I followed the instructions on aroma.affymetrix trying to install the packages; following are the steps: > install.packages(c("R.oo", "R.utils"), contriburl="http://www.braju.com/R/repos/") trying URL 'http://www.braju.com/R/repos//R.oo_1.4.1.zip' Content type 'application/zip' length 889981 bytes (869 Kb) opened URL downloaded 869 Kb trying URL 'http://www.braju.com/R/repos//R.utils_1.0.0.zip' Content type 'application/zip'...

..._Name: Henrik Bengtsson Version: rw1022 OS: Windows Me Submission from: (NULL) (216.175.126.55) When ${R_HOME}/share/perl/maketitle.pl tries to generate a TITLE that is longer than $lc-3 (=13) characters long, it repeats the package name on line two. Example: Now it generates an output like: com.braju.graphics com.braju.graphics Bla bla bla... But, I believe it should generate: com.braju.graphics Bla bla bla... To solve this minor bug, just include a line '$old=""'. See line 49 below. maketitle.pl: L42: $S = ''; L43: $lc = 16; L44: $rc...

...w the DESCRIPTION file is build? My generated DESCRIPTION file looks like this: Package: myPackage Version: 0.1 Date: 2001/07/05 Title: The myBundle bundle - myPackage Author: Henrik Bengtsson Maintainer: Henrik Bengtsson Description: Bla bla bla... License: GPL version 2 or newer URL: http://www.braju.com/R/ Bundle: myBundle Version: 0.6 Date: 2001/06/28 Title: The myBundle bundle Author: Henrik Bengtsson Maintainer: Henrik Bengtsson Description: Bla bla bla... License: GPL version 2 or newer URL: http://www.braju.com/R/ >R.version platform i386-pc-mingw32 arch x86 os Win32 syst...

...ptimized for memory and speed. To avoid coercing integers to doubles, and hence allocate an additional 200% memory, there is one C function for integers and one for doubles. The rowMedians() implementation is currently sitting in my non-CRAN package R.native available by: source("http://www.braju.com/R/hbLite.R") hbLite("R.native") library(R.native) example(rowMedians) The source code package is available at: http://www.braju.com/R/repos/R.native_0.1.2.tar.gz Before I submit a package to CRAN consisting of pretty much just rowMedians(), would it make more sense for it to...

...epends on R.oo for the above reason. I do not use namespaces. To attach R.oo to load R.matlab, I add R.oo in the Depends field of DESCRIPTION as follows: Package: R.matlab Version: 1.0 Date: 2005-02-15 Title: Matlab connectivity and read and write of MAT files Author: Henrik Bengtsson <henrikb@braju.com> Maintainer: Henrik Bengtsson <henrikb@braju.com> Depends: R.oo Description: This package provides methods to read and write MAT files. It also makes it possible to communicate (evaluate code, send and retrieve objects etc.) with Matlab v6 or higher running locally or on a remote host...

...try.R R/GenePixData.R R/Layout.R R/ImaGeneData.R R/MicroarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R R/Filter.R R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R R/LayoutGroups.R R/BFilter.R R/com.braju.sma.R R/Copy of TFilter.R R/Copy of SSMatrix.R R/private.utils.R R/WangetalData.R R/KHessFilter.R R/DfFilter.R R/SpotData.R R/ScanAlyzeData.R R/BMAData.R R/AFilter.R R/MFilter.R R/Layout.obsolete.R R/AndFilter.R R/OrFilter.R R/SEFilter.R R/TFilter.R R/AcceptFilter.R R/SpotPosition.R R/SerialFilter....

...using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * checking for file 'matrixStats/DESCRIPTION' ... OK * this is package 'matrixStats' version '0.12.0' * checking CRAN incoming feasibility ... NOTE Maintainer: 'Henrik Bengtsson <henrikb at braju.com>' Possibly mis-spelled words in DESCRIPTION: rowMedians (18:74) rowRanks (18:92) rowSds (18:111) * checking package namespace information ... OK ... Thanks Henrik

[cc:ing to the maintainer of digest] FYI, package 'digest' (v0.2.1 2005/11/04 04:45:53) generates the same output regardless of input with R v2.4.0 devel (2006-07-25 r38698). Starting a vanilla R session you get: > library(digest) > digest(1) [1] "3416a75f4cea9109507cacd8e2f2aefc" > digest(2) [1] "3416a75f4cea9109507cacd8e2f2aefc" > digest(rnorm(10)) [1]

...at("b =", get(b), "\n"); # b = 10 set(a, 10); set(b, 20); cat("a =", get(a), "\n"); # a = 10 cat("b =", get(b), "\n"); # b = 20 Have a nice day Henrik Bengtsson PhD Student in Statistics Lund University & UC Berkeley henrikb at braju.com -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at...

Hi, I'm trying to remove/delete a directory usingR. I've tried the following with no success: % Rterm --vanilla > getwd() [1] "C:/Documents and Settings/hb/braju.com.R/aroma.affymetrix/test" > dir.create("foo") > file.info("foo") size isdir mode mtime ctime atime foo 0 TRUE 777 2007-02-28 14:52:10 2007-02-28 14:52:10 2007-02-28 14:52:10 # Using file.remove() > res <- s...

I tried different versions of sma**.tar.gz file either with "R CMD INSTALL -l packagepath sma**.tar.gz", "R INSTALL -l path sma**.tar.gz" and under R windows by "install.packages("sma_0.5.15.tar.gz",repos=NULL)" . I got same error ====== * installing *source* package 'sma' ... ** Creating default NAMESPACE file Warning in .write_description(db,

Full_Name: Bart Version: 1.7.1 OS: XP Submission from: (NULL) (150.203.41.62) When trying to load microarray slides (gpr format) into R 1.7.1, I get the following error message Error in scan(file = file, what = what, sep = sep, quote = quote, dec = dec, : line 1057 did not have 43 elements I have been able to load the files on another computer before including an XP machine. I have

...ID: 1033 Additional Information 1: 1c1d Additional Information 2: e064c795479179a5f08d19e37de8915e Additional Information 3: 50ea Additional Information 4: 02a385f4f3dcffff3301c3a9d270f946 same occurs when calling: "%ProgramFiles%/R/R-2.12.0dev/bin/R.exe" However, C:\Users\hb\braju.com.R\R.matlab,R-forge>"%ProgramFiles%/R/R-2.12.0dev/bin/i386/Rterm.exe" -e "sessionInfo()" R version 2.12.0 Under development (unstable) (2010-05-21 r52061) Copyright (C) 2010 The R Foundation for Statistical Computing ISBN 3-900051-07-0 Platform: i386-pc-mingw32/i386 (32-b...

...g packages for a couple of months now without any problems. However, a couple of hours ago I ran into a strange problem, which I first couldn't understand or fix: >Rcmd build --binary R.base ... make[1]: *** [/tmp/Rbuild.468075/R.base/zzzz] Error 1 make[1]: Leaving directory `/users/braju.com.R/public_html/R.base/R.base' make: *** [pkg-R.base] Error 2 make: Leaving directory `/progs/R/rw1030/src/gnuwin32' *** Installation of R.base failed *** ... REASON: As usual you think that *you* didn't do anything different than usual. However, yesterday I added a library(R...

...t; the first few hours on CRAN when the stable 2.2.1 version first came out]. However, when I try to install the same on R Version 2.2.1 Patched (2006-02-09 r37305) as well as R Version 2.3.0 Under development (unstable) (2006-02-02 r37243), I get the following error: C:\Documents and Settings\hb\braju.com.R\R.native\build>Rcmd install R.native ---------- Making package R.native ------------ adding build stamp to DESCRIPTION making DLL ... making rowMedians.d from rowMedians.c gcc -IC:/PROGRA~1/R/R-2.2.1pat/include -Wall -O2 -c rowMedians.c -o rowMedia ns.o ar cr R.native.a rowMedians...

I'm frightfully new at developing r packages. I'm developing an econometrics package, and each time I update my beta package, I close R, delete the package dir in the library dir, rebuild the zip file, rerun R, reinstall the package and run the functions. Is there a more efficient way? Jeff. Jeff D. Hamann Hamann, Donald & Associates, Inc. PO Box 1421 Corvallis, Oregon USA 97339-1421

...oarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R > > > R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R > > R/Filter.R > > > R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R > > > R/LayoutGroups.R R/BFilter.R R/com.braju.sma.R R/Copy of > > TFilter.R R/Copy of > > > SSMatrix.R R/private.utils.R R/WangetalData.R R/KHessFilter.R > > R/DfFilter.R > > > R/SpotData.R R/ScanAlyzeData.R R/BMAData.R R/AFilter.R R/MFilter.R > > > R/Layout.obsolete.R R/AndFilter.R R/OrFilter.R R/SEFilte...

...a.R > > R/MicroarrayData.PLOT.R R/QualityData.R R/MicroarrayData.R R/MAData.R > > R/MAData.NORM.R R/zzz.R R/Replicates.R R/SMA.R R/FieldFilter.R > R/Filter.R > > R/QuantArrayData.R R/RGData.R R/RawData.R R/000.R R/MicroarrayData.IO.R > > R/LayoutGroups.R R/BFilter.R R/com.braju.sma.R R/Copy of > TFilter.R R/Copy of > > SSMatrix.R R/private.utils.R R/WangetalData.R R/KHessFilter.R > R/DfFilter.R > > R/SpotData.R R/ScanAlyzeData.R R/BMAData.R R/AFilter.R R/MFilter.R > > R/Layout.obsolete.R R/AndFilter.R R/OrFilter.R R/SEFilter.R R/TFilter.R > >...

...=TRUE) the line numbers are printed. Example: > scan(quiet=TRUE) 1: 123 [ENTER] 2: [ENTER] [1] 123 > Is it possible to not show the line numbers? I know about readLines() but I would like to be able to use the extra features of scan(). Thanks for you help! Henrik Bengtsson henrikb at braju.com -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request at...