search for: bmm

...e from pg.50 of Hadley's ggplot pdf book. ===========================Hadleys example=========================== library(nlme) # to get Oxboy dataset p <- ggplot(Oxboys, aes(age, height, group = Subject)) + geom_line() p ========================NON-WORKING CODE============================= bmm <- melt(bmi, id=c("pct")) names(bmm) <- c("age", "pp", "bm") bmm[,2] <- as.ordered(bmm[,2]) p <- ggplot(bmm, aes(x="age", y="bm", colour="pp", group="pp")) p <- p + geom_line() p =====================...

Hello, everyone I have a piece of code that looks like this: mrets <- merge(mrets, BMM.SR=apply(mrets, 1, MyFunc, ret="BMM.AV120", stdev="BMM.SD120")) mrets <- merge(mrets, GM1.SR=apply(mrets, 1, MyFunc, ret="GM1.AV120", stdev="GM1.SD120")) mrets <- merge(mrets, IYC.SR=apply(mrets, 1, MyFunc, ret="IYC.AV120", stdev="IYC.SD1...

...Performance Improvements 6 > Added Tests 2 > Unchanged Tests 938 > *Total Tests* *963* > > > Changes Detail > > Performance Regressions Δ Previous Current σ > MultiSource/Applications/aha/aha.exec 12.07% 3.5424 3.9698 0.0002 > MultiSource/Benchmarks/VersaBench/bmm/bmm.exec 11.38% 2.2970 2.5585 0.0007 > External/SPEC/CFP2000/179_art/179_art.exec 10.95% 1.4190 1.5744 0.0013 > MultiSource/Applications/JM/lencod/lencod.exec 6.81% 11.8149 12.6195 0.0267 > External/SPEC/CINT2006/458_sjeng/458_sjeng.exec 5.72% 6.0263 6.3711 0.0076 > MultiSource/Benchmar...

...Tests 2 >> Unchanged Tests 938 >> *Total Tests* *963* >> >> >> Changes Detail >> >> Performance Regressions Δ Previous Current σ >> MultiSource/Applications/aha/aha.exec 12.07% 3.5424 3.9698 0.0002 >> MultiSource/Benchmarks/VersaBench/bmm/bmm.exec 11.38% 2.2970 2.5585 0.0007 >> External/SPEC/CFP2000/179_art/179_art.exec 10.95% 1.4190 1.5744 0.0013 >> MultiSource/Applications/JM/lencod/lencod.exec 6.81% 11.8149 12.6195 0.0267 >> External/SPEC/CINT2006/458_sjeng/458_sjeng.exec 5.72% 6.0263 6.3711 0.0076 >> Mult...

Hi, Is there some tool or method in centos that can limit cpu usage to some percentage for specified processes that consume large cpu resource? I found cpulimit which is only able to limit one process. what I want is one tool that can limit several same processes' cpu usage. Thanks! Regards andrew

In this thread: http://syslinux.zytor.com/archives/2007-February/008014.html I reported that IBM Opteron servers with Broadcom BCM5780 chipsets would freeze randomly in the PXE menus from the SYSLINUX 3.35 tools vesamenu.c32 and menu.c32. There did not seem to be any reason for this nor systematics in when the servers would lock up. The solution is now available: Upgrade your IBM servers to

...Biomolecular Modelling Laboratory Cancer Research UK, London Research Institute 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone1 : +44-(0)20-72693405 | fax : +44-(0)20-75945789 phone2 : +44-(0)20-75945776 | mobil: +44-(0)7984601749 email : a.mueller at cancer.org.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...estions for workarounds? thanks very much for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...left of the visible area? thanks a lot for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...this to get going. thanks very much for any help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...y hand-tuned, target specific versions (ref. cache properties). Even if you argue this is a valid "automatic optimization" it still is only one improvement shown five times. Note also how matrix-matrix multiplications perform when there are not matched: MultiSource/Benchmarks/VersaBench/bmm/bmm SingleSource/Benchmarks/Polybench/linear-algebra/kernels/trmm/trmm Last time I checked the impact of Polly on the TSVC benchmarks I realized that the effect was due to unrelated passes scheduled by Polly. This might have changed by now but I doubt it. This leaves ten improved Polybench bench...

...ing striped, dotted etc ... thanks for comments, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-reques...

...there a workaround for this? thanks a lot for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...ing striped, dotted etc ... thanks for comments, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-reques...

...Biomolecular Modelling Laboratory Cancer Research UK, London Research Institute 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone1 : +44-(0)20-72693405 | fax : +44-(0)20-75945789 phone2 : +44-(0)20-75945776 | mobil: +44-(0)7984601749 email : a.mueller at cancer.org.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

Hi, I have just tagged 3.7.1-rc1, so it is ready for testing. As a reminder, when doing regression testing, use the 3.7.0 release as your baseline. Thanks, Tom

Hi all, I've started looking at the GlobalMerge pass, enabled by default on ARM and AArch64. I think we should reconsider that, at least for AArch64. As is, the pass just merges all globals together, in groups of 4KB (AArch64, 128B on ARM). At the time it was enabled, the general thinking was "it's almost free, it doesn't affect performance much, we might as well use it".

...the new frame or matrix manually? thanks for help, Arne -- Arne Mueller Biomolecular Modelling Laboratory Imperial Cancer Research Fund 44 Lincoln's Inn Fields London WC2A 3PX, U.K. phone : +44-(0)207 2693405 | fax :+44-(0)207-269-3534 email : a.mueller at icrf.icnet.uk | http://www.bmm.icnet.uk -.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.-.- r-help mailing list -- Read http://www.ci.tuwien.ac.at/~hornik/R/R-FAQ.html Send "info", "help", or "[un]subscribe" (in the "body", not the subject !) To: r-help-request...

...e/Applications/d/make_dparser | * | * | MultiSource/Applications/SPASS/SPASS | * | * | MultiSource/Applications/oggenc/oggenc | * | * | MultiSource/Benchmarks/VersaBench/bmm/bmm | * | * | MultiSource/Benchmarks/VersaBench/ecbdes/ecbdes | * | * | MultiSource/Benchmarks/VersaBench/beamformer/beamformer | * | * | MultiSource/Benchmarks/VersaBench/dbms/dbms...

...-1.7857142857142 Benchmarks/VersaBench/dbms/dbms 0.8088 0.7949 -1.7185954500494 Benchmarks/ASC_Sequoia/CrystalMk/CrystalMk 3.7015 3.6379 -1.7182223422936 Benchmarks/Olden/health/health 0.1787 0.1757 -1.6787912702854 Benchmarks/VersaBench/bmm/bmm 1.4694 1.4455 -1.6265142234925 Benchmarks/McCat/01-qbsort/qbsort 0.0876 0.0862 -1.5981735159817 Applications/ClamAV/clamscan 0.094 0.0925 -1.5957446808510 Benchmarks/McCat/17-bintr/bintr 0.0666 0.0658...