search for: bdirect

...3" export CXX=icpc export CXXFLAGS="-g -O3" export FC=ifort export FCFLAGS="-g -O3" export SHLIB_CXXLD=icpc export LD_LIBRARY_PATH=${LD_LIBRARY_PATH}:${MKL_LIB_PATH}:${INC_LIB_PATH}:${CMP_LIB_PATH} export LDFLAGS="-L${MKL_LIB_PATH},-L${INC_LIB_PATH},-L${CMP_LIB_PATH},-Bdirect,--hash-style=both,-Wl,-O1" export SHLIB_LDFLAGS="-lpthread" export SHLIB_CXXLDFLAGS="-lpthread" export MAIN_LDFLAGS="-lpthread" MKL="-L${MKL_LIB_PATH} -L${INC_LIB_PATH} -lmkl_lapack95_lp64 -lmkl_intel_lp64 -lmkl_intel_thread -lmkl_core -liomp5 -lpthread&quo...

...- Hash: SHA1 Hi I know this has been asked before, but I can not find it - so my apologies. I want to compile R myself, to optimize it for speed. There is a small section (a few lines actually) in the R-admin manual (Compilation-flags) which states that the LDFLAGS "on recent systems ?'-Bdirect,--hash-style=both,-Wl,-O1'? is recommended". But I set LDFLAGS, and it is actually slightly slower then the Ubuntu binary. So are there any other ressources (probably HotTos?) on how I can tune the compilation of R to make it faster? I am using Maverick, and R info is below: ##########...

...============================= downloaded 54 Kb * installing *source* package ?gee? ... ** libs gfortran -fpic -O2 -g -c dgedi.f -o dgedi.o gfortran -fpic -O2 -g -c dgefa.f -o dgefa.o gcc -I/usr/lib64/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c ugee.c -o ugee.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o gee.so dgedi.o dgefa.o ugee.o -lblas -lgfortran -lm -lgfortran -lm -L/usr/lib64/R/lib -lR /usr/bin/ld: cannot find -lblas collect2: ld returned 1 exit status make: *** [gee.so] Error 1 ERROR: compilation failed for package ?gee? * removing ?/homedirs4/sghms/medmicro/use...

...clude -fpic -O3 -g -std=gnu99 -c garch.c -o garch.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c ppsum.c -o ppsum.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -fpic -O3 -g -std=gnu99 -c tsutils.c -o tsutils.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o tseries.so arma.o bdstest.o boot.o dsumsl.o garch.o ppsum.o tsutils.o -L/usr/lib/R/lib -lRblas -lgfortran -lm -lgcc_s -lgfortran -lm -lgcc_s -L/usr/lib/R/lib -lR /usr/bin/ld: skipping incompatible /usr/lib/R/lib/libRblas.so when searching for -lRblas /usr/bin/ld: skippi...

...-O3 -g -c matrix.cpp -o matrix.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2 -I/usr/local/include -fpic -O3 -g -std=gnu99 -c smooth.c -o smooth.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -g -O2 -I/usr/local/include -fpic -O3 -g -std=gnu99 -c sobel.c -o sobel.o g++ -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o rimage.so equalize.o fftw_access_func.o freqfilters.o interface.o jpegio.o laplacian.o matrix.o smooth.o sobel.o -ljpeg -lfftw -L/usr/lib/R/lib -lR ** R ** data ** help >>> Building/Updating help pages for package 'rimage' Formats: text html...

...mes_To_StypeIds': RS-Oracle.c:6569: warning: assignment discards qualifiers from pointer target type make[1]: Leaving directory `/tmp/R.INSTALL.T23031/ROracle/src' R CMD SHLIB -o ROracle.so RS-DBI.o RS-Oracle.o make[1]: Entering directory `/tmp/R.INSTALL.T23031/ROracle/src' gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o ROracle.so RS-DBI.o RS-Oracle.o -L/opt/oracle/product/10.2.0/db_1/lib -L/opt/oracle/product/10.2.0/db_1/network/lib -lclntst10 -lnbeq10 -lnhost10 -lnus10 -lnldap10 -lldapclnt10 -lnsslb10 -lntcp10 -lntcps10 -lnsslb10 -lntcp10 -lntns10 -ldl -lm -lpthread -lnsl -lirc -ldl...

...al references to definitions when creating shared objects [-B direct] specify `direct' bindings for executable when run [-B translator] specify that this object is to act as a 'translator' for an application bound with -Bdirect [-D options] print diagnostic messages [-F name] specify library for which this file is a filter [-G] create a shared object [-I interp] use `interp' as path name of interpreter [-L path] search for libraries in directory `pa...

...local/jdk1.5.0_11/jre/../include/linux -fpic -O3 -g -std=gnu99 -c Rglue.c -o Rglue.o gcc -I/usr/lib/R/include -I/usr/lib/R/include -I/usr/local/include -I/usr/local/jdk1.5.0_11/jre/../include -I/usr/local/jdk1.5.0_11/jre/../include/linux -fpic -O3 -g -std=gnu99 -c rJava.c -o rJava.o gcc -shared -Bdirect,--hash-stype=both,-Wl,-O1 -o rJava.so callback.o callJNI.o jri_glue.o Rglue.o rJava.o-L/usr/local/jdk1.5.0_11/jre/lib/i386/client -L/usr/local/jdk1.5.0_11/jre/lib/i386 -L/usr/local/jdk1.5.0_11/jre/../lib/i386 -L/usr/lib/R/lib -L -L/usr/lib/R/lib -L -L/usr/local/jdk1.5.0_11/lib -L/usr/local/jdk1.5.0...