search for: atlas3

...() function it fails with: /usr/bin/ld: cannot find -lblas-3 Dirk was nice enough to send me a .deb for quantreg which installs without error. However, when I try to run the rq command after entering library(quantreg), I get: Error: Object "rq" not found I've tried reinstalling atlas3-base (as Douglas Bates suggested), every R package on my machine and ripping out every config file I can find and re-installing to no avail. I am a true beginner at R and could certainly be doing something or just be missing a package. If anyone has anymore ideas, I'd love to hear them....

Hi All, I'm trying to install the quantreg library on my MEPIS box (debian-based linux). When I try >install.packages("quantreg") it fails to loads and errors with: /usr/bin/ld: cannot find -lblas-3. I tried installing a ton of packages to fix the missing part but the only thing I manage to do it cause problems with another shared library and had to re-install a couple of

Hi All, I'm trying to install the quantreg library on my MEPIS box (debian-based linux). When I try >install.packages("quantreg") it fails to loads and errors with: /usr/bin/ld: cannot find -lblas-3. I tried installing a ton of packages to fix the missing part but the only thing I manage to do it cause problems with another shared library and had to re-install a couple of

...: Ubuntu Hardy + updates + backports + security + R repository on | a 3.2 GHz PIV dual-core processor. | | Bitten (again...) by the "I'll optimize my setup" bug, I tried to test | atlas. Following Dirk's advice on a not-so-recent post to R-help, I | tried "apt-get install -s atlas3-doc atlas3-base-dev" (I tend to | recompile some packages, so I need r-base-dev and I *think* I need | atlas3-base-dev to allow the recompiled packages to use it, but I might | be completely wrong...). Ahem ... : | | [ Snip... ] | | Les paquets suivants seront ENLEV?S : | libblas-dev libla...

...e optimized libraries on my Thinkpad with an Intel Core Solo chip, which apparently supports the following instruction sets: MMX, SSE, SSE2, SSE3 instruction sets, XD-Bit. In a recent r-help message, the following was said (by Dirk I think): <quote> Yes, on Ubuntu, use 'apt-get install atlas3-base' for basic tuned Atlas, or 'apt-get install atlas3-sse2' assuming that sse2 is the closest fit to the cpu in question. </quote> However, while atlas3-base is available in Lenny/Testing, none of the architecture-dependent extensions are. I did find libatlas3gf-*, is this the...

Dear list, I am sorry to bother you with this. I just upgraded yesterday to R 2.0.0 (using apt-get under Debian Sid), and now have problems running e.g., summary(lm(...)) the lm is calculated, but the summary statement gives me the following error: Error in La.chol2inv(x, size) : lapack routines cannot be loaded In addition: Warning message: unable to load shared library

...mental') > | Architecture: i386 (i686) > | > | Kernel: Linux 2.6.21.1-sonne (SMP w/2 CPU cores; PREEMPT) > | Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) > | Shell: /bin/sh linked to /bin/dash > | > | Versions of packages r-base-core depends on: > | ii atlas3-base [libblas.so.3 3.6.0-20.6 Automatically Tuned Linear Algebra > | ii atlas3-sse2 [libblas.so.3 3.6.0-20.6 Automatically Tuned Linear Algebra > | ii libbz2-1.0 1.0.3-6 high-quality block-sorting file co > | ii libc6 2.5-7 GNU...

...repository to system compilation on GNU/Linux system ("gcc" as compiler). Status: * My system specs: - processor Intel 2.8Ghz HT - kernel Linux 2.6.10-5-686-smp - ram 1500 Mbyte * Dataset to use: - ~900 Mbyte of text file * R from svn repository (daily updated) * Installed libs: atlas3 lapack3 * Configure options now: ./configure --prefix=/usr --with-blas --with-lapack --enable-linux-lfs --with-zlib --with-bzlib --with-pcre --with-gnu-ld Questions: 1. after configure execution, I read that my compilation will be with lapack generic. Could I have a better option for that?...

..., 'unstable'), (1, 'experimental') | Architecture: i386 (i686) | | Kernel: Linux 2.6.21.1-sonne (SMP w/2 CPU cores; PREEMPT) | Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) | Shell: /bin/sh linked to /bin/dash | | Versions of packages r-base-core depends on: | ii atlas3-base [libblas.so.3 3.6.0-20.6 Automatically Tuned Linear Algebra | ii atlas3-sse2 [libblas.so.3 3.6.0-20.6 Automatically Tuned Linear Algebra | ii libbz2-1.0 1.0.3-6 high-quality block-sorting file co | ii libc6 2.5-7 GNU C Library: Shar...

Hi, I'm using Ubuntu Hardy i386, and the R 2.7.1 Ubuntu packages from CRAN. The CRAN r-base-dev package depends on refblas3-dev or atlas3-base-dev, but octave3.0-headers depends on libblas-dev. The two blas packages seem to conflict, so r-base-dev and octave3.0-headers can't be installed together. Is this a known issue? Thanks, Gad $ sudo apt-get install octave3.0-headers Reading package lists... Done Building dependency tr...

Listonians, Anyone get * to work together with Vonage? Thanks, Jerry

...37675 language R version.string Version 2.3.0 alpha (2006-04-08 r37675) I'm using ATLAS with the SSE2 extensions, and get the same error with ATLAS 3.2.1 (packages atlas2-* 3.2.1ln-15 in Debian) and 3.6.0 (packages atlas3-* 3.6.0-19 in Debian). I've also tried without external BLAS (--without-blas), but the error still occurs. 43 (0) $ ./configure [...] R is now configured for i686-pc-linux-gnu Source directory: . Installation directory: /usr/local C compiler: gcc -g -O2 -st...

...buted by a few dvd / cdrom re-sellers. Executive Summary for a quick overview: Quantian 0.5.9.3 adds over 360 GNU R packages from the CRAN and BioConductor archives, the GNU geda electronics design software, an almost complete debian-med suite, the complete scalapack development suite, atlas3 and lam development packages, fancy GL screensavers, lots of recommended documentation packages as well as a general update of over 300 Debian packages bringing the size of the iso to over 1.5gb corresponding to 4.4gb uncompressed. Announcing Quantian release 0.5.9.3 ======================...

Hi all, Just a quick note to bring to all Ubuntu users on i386 that the packages for R 2.5.1 (and a few recommended packages needed rebuilding) are now available from CRAN. Supported distributed are Dapper (6.06), Edgy (6.10) and Feisty (7.04). Please report any problems to me and/or this list. --- Vincent Goulet, Associate Professor ?cole d'actuariat Universit? Laval, Qu?bec

I'm trying to build R from source on Ubuntu Gutsy Gibbon. I've done apt-get install r-base-dev and apt-get libX11-dev, but R configure is still complaining about X11 headers/libs are not available. What else do I need? Thanks, Paul ==================================================================================== La version fran?aise suit le texte anglais.

....so.5 (0x00007f9155f46000) --- Also if I have the LAPACK and ATLAS libraries installed: busta at temisto:~$ dpkg -l | grep lapack ii lapack3 3.0.20000531a-6.1ubuntu1 ii liblapack-dev 3.1.1-0.3ubuntu2 ii liblapack3gf 3.1.1-0.3ubuntu2 busta at temisto:~$ dpkg -l | grep atlas ii atlas3-base 3.6.0-20.6 ii libatlas-base-dev 3.6.0-21.1ubuntu3 ii libatlas-headers 3.6.0-21.1ubuntu3 ii libatlas3gf-base...

...'unstable'), (1, 'experimental') | Architecture: i386 (i686) | Shell: /bin/sh linked to /bin/bash | Kernel: Linux 2.6.16-rc5 | Locale: LANG=en_US.UTF-8, LC_CTYPE=en_US.UTF-8 (charmap=UTF-8) (ignored: LC_ALL set to en_US.UTF-8) | | Versions of packages r-base-core depends on: | ii atlas3-base [libblas.so.3 3.6.0-20 Automatically Tuned Linear Algebra | ii libbz2-1.0 1.0.3-2 high-quality block-sorting file co | ii libc6 2.3.6-5 GNU C Library: Shared libraries an | ii libgcc1 1:4.1.0-1 GCC support library...

Hi I bought a new laptop HP dv9500 just a week ago and installed a Ubuntu gutsy ribbon on this laptop. I wanted to install Fedora but there are more threads on Ubuntu, so I decided to install Ubuntu. After hours of struggle in configuring x server/graphic card stuff, I installed R for Gutsy ribbon using "sudo apt-get install g77 r-core'. Now when I tried to install 'sp' package

Hi, I tried to install fMultivar package but an error occurs that I could not understand. (I've been worked with linux / Ubuntu 6.06 LTS) > install.packages("fMultivar") Warning in install.packages("fMultivar") : argument 'lib' is missing: using /usr /local/lib/R/site-library --- Please select a CRAN mirror for use in this session --- Loading Tcl/Tk

...04 2.84 0.00 0.00 > > (but these days use a bigger size than 10^6 and 10^3) > > Then uninstall all your libatlas packages and make do with refblas3 and > liblapack3gf. Rerun the matrix multiplation. Note the time. > > Now install a libatlas* for you architecture, or just libatlas3gf-base and > re-run the same matrix multiplication. You will see a speed up. > > And you didn't have to recompile R. > > All this brought to you by the wizardry of the former (Camm) and current > (Sylvestre) Atlas maintainers in Debian. We owe them a drink. Or two. >...