R SIG Fedora - Jul 2010 - Help installing R Commander on Fedora 13...

I did a standard install of R on Fedora 13 using yum as root, which I
assumed installed both the base packages and the devel packages needed
to install R Commander (there weren't any optional packages listed on
the yum info page). My version of R is updated to the latest 2.11
version.

But, running

install.packages("Rcmdr", dependencies=TRUE) as root, within R
produces the following errors:

(Last few of a looooong list):

** building package indices ...
** testing if installed package can be loaded
Error : .onLoad failed in loadNamespace() for 'tcltk', details:
 call: dyn.load(file, DLLpath = DLLpath, ...)
 error: unable to load shared library '/usr/lib/R/library/tcltk/libs/
tcltk.so':
 /usr/lib/libfontconfig.so.1: undefined symbol: FT_Select_Size
Error : package 'tcltk' could not be loaded
ERROR: loading failed
* removing ?/usr/lib/R/library/Rcmdr?

The downloaded packages are in
       ?/tmp/RtmpDSqgk5/downloaded_packages?
Updating HTML index of packages in '.Library'
Warning messages:
1: In doTryCatch(return(expr), name, parentenv, handler) :
 unable to load shared library '/usr/lib/R/modules//R_X11.so':
 /usr/lib/libfontconfig.so.1: undefined symbol: FT_Select_Size
2: In install.packages("Rcmdr", dependencies = TRUE) :
 installation of package 'aplpack' had non-zero exit status
3: In install.packages("Rcmdr", dependencies = TRUE) :
 installation of package 'relimp' had non-zero exit status
4: In install.packages("Rcmdr", dependencies = TRUE) :
 installation of package 'rgl' had non-zero exit status
5: In install.packages("Rcmdr", dependencies = TRUE) :
 installation of package 'RODBC' had non-zero exit status
6: In install.packages("Rcmdr", dependencies = TRUE) :
 installation of package 'Rcmdr' had non-zero exit status

It seems I am missing some packages needed to compile and run R
Commander, but I can't figure out which. I did a standard install of R
from yum on Fedora 13, so I'm not sure which other packages I need.

On Jul 1, 2010, at 1:01 PM, Carlo Tambuatco wrote:
> I did a standard install of R on Fedora 13 using yum as root, which I
> assumed installed both the base packages and the devel packages needed
> to install R Commander (there weren't any optional packages listed on
> the yum info page). My version of R is updated to the latest 2.11
> version.
> 
> But, running
> 
> install.packages("Rcmdr", dependencies=TRUE) as root, within R
> produces the following errors:
> 
> (Last few of a looooong list):
> 
> ** building package indices ...
> ** testing if installed package can be loaded
> Error : .onLoad failed in loadNamespace() for 'tcltk', details:
> call: dyn.load(file, DLLpath = DLLpath, ...)
> error: unable to load shared library '/usr/lib/R/library/tcltk/libs/
> tcltk.so':
> /usr/lib/libfontconfig.so.1: undefined symbol: FT_Select_Size
> Error : package 'tcltk' could not be loaded
> ERROR: loading failed
> * removing ?/usr/lib/R/library/Rcmdr?
> 
> The downloaded packages are in
>       ?/tmp/RtmpDSqgk5/downloaded_packages?
> Updating HTML index of packages in '.Library'
> Warning messages:
> 1: In doTryCatch(return(expr), name, parentenv, handler) :
> unable to load shared library '/usr/lib/R/modules//R_X11.so':
> /usr/lib/libfontconfig.so.1: undefined symbol: FT_Select_Size
> 2: In install.packages("Rcmdr", dependencies = TRUE) :
> installation of package 'aplpack' had non-zero exit status
> 3: In install.packages("Rcmdr", dependencies = TRUE) :
> installation of package 'relimp' had non-zero exit status
> 4: In install.packages("Rcmdr", dependencies = TRUE) :
> installation of package 'rgl' had non-zero exit status
> 5: In install.packages("Rcmdr", dependencies = TRUE) :
> installation of package 'RODBC' had non-zero exit status
> 6: In install.packages("Rcmdr", dependencies = TRUE) :
> installation of package 'Rcmdr' had non-zero exit status
> 
> It seems I am missing some packages needed to compile and run R
> Commander, but I can't figure out which. I did a standard install of R
> from yum on Fedora 13, so I'm not sure which other packages I need.

Not all R CRAN packages are available via the Fedora yum repos. Thus, it is not
possible for the R yum base/devel RPM packages to include all possible RPM
dependencies.

You are of course running into problems when installing Rcmdr from source, since
it is requiring other non-R dependencies, either directly or as a result of the
external dependencies from the other CRAN packages that it lists as suggestions.
So if you want to install those, you will need to review the installation
requirements for each of the other packages as well.

These would seem to include the libX11-devel and xorg-x11-server-devel RPMs to
solve the x11 issue.

For the fontconfig error, you will need the fontconfig-devel RPM.

If you have not already, install the tcl-devel and tk-devel RPMs for tcl/tk
support.

For RODBC, you will need the unixODBC and unixODBC-devel RPMs. 

For rgl, I suspect that you will need the mesa-libGLU-devel and mesa-libGL-devel
RPMs.

Install those and see how far you get after that.

HTH,

Marc Schwartz