Displaying 20 results from an estimated 76 matches for "dotrycatch".
2012 May 15
1
KEGGSOAP installation error
...ical(isSchema), as.logical(fullNamespaceInfo),
as.character(encoding), as.logical(useDotNames), xinclude, error,
addFinalizer, PACKAGE = "XML")
2: xmlParse(url)
3: parseSchemaDoc(fileName)
4: processWSDL("http://soap.genome.jp/KEGG.wsdl")
5: fun(libname, pkgname)
6: doTryCatch(return(expr), name, parentenv, handler)
7: tryCatchOne(expr, names, parentenv, handlers[[1L]])
8: tryCatchList(expr, classes, parentenv, handlers)
9: tryCatch(fun(libname, pkgname), error = identity)
10: runHook(".onLoad", env, package.lib, package)
11: loadNamespace(package, c(which.l...
2009 Jan 07
1
Compiling R for Solaris 10 Intel
...about a similar problem, but there was no resolution. Have other people experienced this at all?
Tia!
-y
> library(foreign)
*** caught segfault ***
address fe899a60, cause 'invalid permissions'
Traceback:
1: .C("spss_init", PACKAGE = "foreign")
2: fun(...)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1]], quote(doTryCatch)))...
2013 Jun 07
1
cannot load pbdMPI package after compilation
...R/3.0.0/intel13/lib64/R/bin/R' --no-save --slave 2>&1 <
/tmp/RtmpGkncGK/file1e541c57190
ERROR: loading failed
*** caught segfault ***
address (nil), cause 'unknown'
Traceback:
1: .Call("spmd_initialize", PACKAGE = "pbdMPI")
2: fun(libname, pkgname)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1L]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(fun(libname, pkgname), error = identity)
7: runHook(".onLoad", env, package.lib, package)
8: loadNamespace(package, c(which.l...
2007 Dec 10
1
Building R on Sun Solaris 10 (SPARC) using Sun Studio 12
...that I am getting when attempting to load "foreign":
> > library(foreign)
>
> *** caught segfault ***
> address fbb1dc40, cause 'invalid permissions'
>
> Traceback:
> 1: .C("spss_init", PACKAGE = "foreign")
> 2: fun(...)
> 3: doTryCatch(return(expr), name, parentenv, handler)
> 4: tryCatchOne(expr, names, parentenv, handlers[[1]])
> 5: tryCatchList(expr, classes, parentenv, handlers)
> 6: tryCatch(expr, error = function(e) { call <-
> conditionCall(e) if (!is.null(call)) { if
> (identical(call[[...
2018 Sep 19
5
segfault issue with parallel::mclapply and download.file() on Mac OS X
...BC.RAP_0.9.0.tar.gz'
*** caught segfault ***
address 0x11575ba3a, cause 'memory not mapped'
*** caught segfault ***
address 0x11575ba3a, cause 'memory not mapped'
Traceback:
1: download.file(paste0(url_base, s), s)
2: FUN(X[[i]], ...)
3: lapply(X = S, FUN = FUN, ...)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))...
2017 Sep 21
2
rcorr error in R stat
...u so much for your input.
>
> I am relatively new to R and I don't understand this "read.csv
> returns data.frames". Sorry.
>
> This however did not work. "unlist(x) and unlist(y)". I got a series
> of 43 warnings:
>
> Warning messages:
> 1: In doTryCatch(return(expr), name, parentenv, handler) :
> ? "method" is not a graphical parameter
> 2: In doTryCatch(return(expr), name, parentenv, handler) :
> ? "method" is not a graphical parameter
> .
> .
> .
> .
> .
>
> ? "method" is not a graphica...
2011 Jan 27
0
Problems installing gputools
...** testing if installed package can be loaded
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, c(which.lib.loc, lib.loc), keep.source =
keep.source)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch))) call <-
sys.c...
2017 Sep 21
0
rcorr error in R stat
...t;
>> I am relatively new to R and I don't understand this "read.csv
>> returns data.frames". Sorry.
>>
>> This however did not work. "unlist(x) and unlist(y)". I got a series
>> of 43 warnings:
>>
>> Warning messages:
>> 1: In doTryCatch(return(expr), name, parentenv, handler) :
>> ? "method" is not a graphical parameter
>> 2: In doTryCatch(return(expr), name, parentenv, handler) :
>> ? "method" is not a graphical parameter
>> .
>> .
>> .
>> .
>> .
>>
>>...
2009 Mar 20
1
sprintf causes a segfault (PR#13613)
...)
# segfault, immediate exit
e = tryCatch(stop(), error=identity)
sprintf('%s', e)
# segfault, choice of options
# ^c, stay in the session
e = tryCatch(stop(), error=identity)
x = 1 # possibly, whatever code would do
sprintf('%s', e)
# [1] "Error in doTryCatch(return(expr), name, parentenv, handler): \n"
# [2] "Error in doTryCatch(return(expr), name, parentenv, handler): \n"
sprintf('%s', e)
# segfault, immediate exit
in the second code snippet above, on some executions the error message was
printed. on others a segfault...
2008 Mar 12
1
gracefully handing a library load error
...to an X
session (like if I'm sshed in), attempting "library(cairoDevice)" causes:
*** caught segfault ***
address 0x8, cause 'memory not mapped'
Traceback:
1: .C("R_gtk_setEventHandler", PACKAGE = "cairoDevice")
2: firstlib(which.lib.loc, package)
3: doTryCatch(return(expr), name, parentenv, handler)
4: tryCatchOne(expr, names, parentenv, handlers[[1]])
5: tryCatchList(expr, classes, parentenv, handlers)
6: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1]],
quote(doTryCatch)))...
2018 Jul 05
2
Segfault on ubuntu 18.04
...p)
> devtools::install_github("goranbrostrom/eha", build_vignettes = TRUE)
*** caught segfault ***
address 0x68456, cause 'memory not mapped'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(name)
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(loadNamespace(name), error = function(e) stop(e))
8: getNamespace(ns)
9: asNamespace(ns)
10: getExportedValue(pkg, name)
11: curl:...
2012 Feb 06
1
Segfault on ".C" registration via R_CMethodDef according to 'Writing R Extensions'.
...ting if installed package can be loaded
*** arch - i386
*** caught bus error ***
address 0xe, cause 'non-existent physical address'
Traceback:
1: dyn.load(file, DLLpath = DLLpath, ...)
2: library.dynam(lib, package, package.lib)
3: loadNamespace(package, c(which.lib.loc, lib.loc))
4: doTryCatch(return(expr), name, parentenv, handler)
5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
6: tryCatchList(expr, classes, parentenv, handlers)
7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))...
2007 Aug 23
2
read big text file into R
...0.0 0.02 0.0
"file" 0.02 0.0 0.02 0.0
"make.names" 0.02 0.0 0.02 0.0
"print.default" 0.02 0.0 0.02 0.0
"read.delim" 0.00 0.0 154.28 99.9
"doTryCatch" 0.00 0.0 0.08 0.1
"gsub" 0.00 0.0 0.08 0.1
"try" 0.00 0.0 0.08 0.1
"tryCatch" 0.00 0.0 0.08 0.1
"tryCatchList" 0.00 0.0...
2018 Oct 04
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
...t; address 0x11575ba3a, cause 'memory not mapped'
>
> *** caught segfault ***
> address 0x11575ba3a, cause 'memory not mapped'
>
> Traceback:
> 1: download.file(paste0(url_base, s), s)
> 2: FUN(X[[i]], ...)
> 3: lapply(X = S, FUN = FUN, ...)
> 4: doTryCatch(return(expr), name, parentenv, handler)
> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 6: tryCatchList(expr, classes, parentenv, handlers)
> 7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
> (!is.null(call)) { if (identical(call[[1L]...
2007 Mar 15
4
R 2.5.0 devel try issue in conjuntion with S4 method dispatch
...Object", signature=c("foo", "numeric"), plotObject.foo,
where=.GlobalEnv)
fooObject <- new("foo")
## should fail and return object with attribute 'try-error' set
ret <- try(plotObject(fooObject, character(1)))
Error in as.list(call)[[1]] == "doTryCatch" :
comparison (1) is possible only for atomic and list types
>is(ret)
Error in .class1(object) : object "ret" not found
which I belive is in contradiction to the documentation, where in
Details:
The value of the expression if 'expr' is evaluated without err...
2012 Feb 23
1
segfault when using data.table package in conjunction with foreach
...PairSums(paste(GERMLINE, "bc.chr22.q.20.file", sep =
""), num, nr)
5: system.time({ computeAllPairSums(paste(GERMLINE,
"bc.chr22.q.20.file", sep = ""), num, nr)})
6: eval(expr, envir, enclos)
7: eval(c.expr, envir = args, enclos = envir)
8: doTryCatch(return(expr), name, parentenv, handler)
9: tryCatchOne(expr, names, parentenv, handlers[[1L]])
10: tryCatchList(expr, classes, parentenv, handlers)
11: tryCatch(eval(c.expr, envir = args, enclos = envir), error = function(e) e)
12: FUN(X[[1L]], ...)
13: lapply(S, FUN, ...)
14: doTryCatch(return(ex...
2009 Dec 30
1
seg-fault... but on what
...where = where)
3: as(obj, "integer")
4: mysqlConnectionInfo(dbObj, ...)
5: dbGetInfo(conn, "rsId")
6: dbGetInfo(conn, "rsId")
7: dbListResults(con)
8: dbListResults(con)
9: mysqlQuickSQL(conn, statement, ...)
10: dbGetQuery(con, sql)
11: dbGetQuery(con, sql)
12: doTryCatch(return(expr), name, parentenv, handler)
13: tryCatchOne(expr, names, parentenv, handlers[[1L]])
14: tryCatchList(expr, classes, parentenv, handlers)
15: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]],
quote(doTryCatch)))...
2018 Sep 20
0
segfault issue with parallel::mclapply and download.file() on Mac OS X
...**
> address 0x11575ba3a, cause 'memory not mapped'
>
> *** caught segfault ***
> address 0x11575ba3a, cause 'memory not mapped'
>
> Traceback:
> 1: download.file(paste0(url_base, s), s)
> 2: FUN(X[[i]], ...)
> 3: lapply(X = S, FUN = FUN, ...)
> 4: doTryCatch(return(expr), name, parentenv, handler)
> 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])
> 6: tryCatchList(expr, classes, parentenv, handlers)
> 7: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
> (!is.null(call)) { if (identical(call[[1L]],...
2010 Oct 10
1
segfault caused by `icfit` in `interval` package
...t;, R, B, max.inner, max.outer, tol)
2: computeMLE(R, B, max.inner = max.inner, max.outer = max.outer, tol =
tol)
3: initcomputeMLE(<<<<< arguments passed to initcomputeMLE>>>>>)
4: do.call(initfit, args = list(L = L, R = R, Lin = Lin, Rin = Rin, A =
A))
5: doTryCatch(return(expr), name, parentenv, handler)
6: tryCatchOne(expr, names, parentenv, handlers[[1L]])
7: tryCatchList(expr, classes, parentenv, handlers)
8: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]],
quote(doTryCatch)))...
2010 Mar 25
1
*** caught segfault *** address 0x18, cause 'memory not mapped'
...k("out22031001.txt")
> > fmainsimbiasP(10000,100)
proc.time()-ptm
*** caught segfault ***
address 0x18, cause 'memory not mapped'
Traceback:
1: nlm(f = fprof_deriv, x = x, p = parHInt, b = parFIX, hessian = T,
iterlim = 2000, check.analyticals = F, stepmax = 10)
2: doTryCatch(return(expr), name, parentenv, handler)
3: tryCatchOne(expr, names, parentenv, handlers[[1]])
4: tryCatchList(expr, classes, parentenv, handlers)
5: tryCatch(expr, error = function(e) { call <- conditionCall(e)
if (!is.null(call)) { if (identical(call[[1]],
quote(doTryCatch)))...