Christofer Bogaso
2019-Jan-06 17:36 UTC
[R-sig-Debian] Failed to install RQuantLib in Ubuntu machine
Hi,
<This issue was previously posted in R-help, but advised to post here as a
more relevant group>
I was trying to install RQuantLib in my Ubuntu machine which failed with
below information :
*> install.packages('RQuantLib', repos='http://cran.rstudio.com/
<http://cran.rstudio.com/>', INSTALL_opts = c('--no-lock'))*
*Installing package into ?/usr/local/lib/R/site-library?*
*(as ?lib? is unspecified)*
*trying URL 'http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz
<http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz>'*
*Content type 'application/x-gzip' length 189726 bytes (185 KB)*
*==================================================*
*downloaded 185 KB*
** installing *source* package ?RQuantLib? ...*
*** package ?RQuantLib? successfully unpacked and MD5 sums checked*
*checking whether the C++ compiler works... yes*
*checking for C++ compiler default output file name... a.out*
*checking for suffix of executables... *
*checking whether we are cross compiling... no*
*checking for suffix of object files... o*
*checking whether we are using the GNU C++ compiler... yes*
*checking whether g++ accepts -g... yes*
*checking how to run the C++ preprocessor... g++ -E*
*checking whether we are using the GNU C++ compiler... (cached) yes*
*checking whether g++ accepts -g... (cached) yes*
*checking for R... yes*
*checking for quantlib-config... yes*
*checking for Boost development files... yes*
*checking for minimal Boost version... yes*
*configure: creating ./config.status*
*config.status: creating src/Makevars*
*Completed configuration and ready to build.*
*** libs*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
RcppExports.cpp -o RcppExports.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
affine.cpp -o affine.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
asian.cpp -o asian.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
barrier_binary.cpp -o barrier_binary.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
bermudan.cpp -o bermudan.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
bonds.cpp -o bonds.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
calendars.cpp -o calendars.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
curves.cpp -o curves.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
dates.cpp -o dates.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
daycounter.cpp -o daycounter.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
discount.cpp -o discount.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
hullwhite.cpp -o hullwhite.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
implieds.cpp -o implieds.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
modules.cpp -o modules.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
sabr.cpp -o sabr.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
schedule.cpp -o schedule.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
utils.cpp -o utils.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
vanilla.cpp -o vanilla.o*
*g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
-I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
-fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
-D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
-I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
-Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
zero.cpp -o zero.o*
*g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
-Wl,-z,relro -o RQuantLib.so RcppExports.o affine.o asian.o
barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o
daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o
utils.o vanilla.o zero.o -L/usr/local/lib -lQuantLib -fopenmp
-L/usr/lib/R/lib -lR*
*installing to /usr/local/lib/R/site-library/RQuantLib/libs*
*** R*
*** data*
*** demo*
*** inst*
*** preparing package for lazy loading*
*** help*
**** installing help indices*
*** building package indices*
*** testing if installed package can be loaded*
* *** caught segfault ****
*address 0x7f255e91a9a0, cause 'invalid permissions'*
*Traceback:*
* 1: dyn.load(file, DLLpath = DLLpath, ...)*
* 2: library.dynam(lib, package, package.lib)*
* 3: loadNamespace(package, lib.loc)*
* 4: doTryCatch(return(expr), name, parentenv, handler)*
* 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
* 6: tryCatchList(expr, classes, parentenv, handlers)*
* 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc ns
<-
loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos,
deps)}, error = function(e) { P <- if (!is.null(cc <-
conditionCall(e)))
paste(" in", deparse(cc)[1L]) else "" msg
<-
gettextf("package or namespace load failed for %s%s:\n %s",
sQuote(package), P, conditionMessage(e)) if (logical.return)
message(paste("Error:", msg), domain = NA) else stop(msg, call. =
FALSE,
domain = NA)})*
* 8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return
= TRUE)*
* 9: withCallingHandlers(expr, packageStartupMessage = function(c)
invokeRestart("muffleMessage"))*
*10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE))*
*11: doTryCatch(return(expr), name, parentenv, handler)*
*12: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
*13: tryCatchList(expr, classes, parentenv, handlers)*
*14: tryCatch(expr, error = function(e) { call <- conditionCall(e) if
(!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
call <- sys.call(-4L) dcall <- deparse(call)[1L]
prefix <- paste("Error in", dcall, ": ") LONG
<- 75L msg <-
conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]] w
<- 14L
+ nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na
<http://is.na>(w)) w <- 14L + nchar(dcall, type =
"b") +
nchar(sm[1L], type = "b") if (w > LONG)
prefix <- paste0(prefix, "\n ") } else prefix <-
"Error : " msg
<- paste0(prefix, conditionMessage(e), "\n")
.Internal(seterrmessage(msg[1L])) if (!silent &&
identical(getOption("show.error.messages"), TRUE)) {
cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
invisible(structure(msg, class = "try-error", condition = e))})*
*15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
character.only = TRUE, logical.return = TRUE)))*
*16: tools:::.test_load_package("RQuantLib",
"/usr/local/lib/R/site-library")*
*An irrecoverable exception occurred. R is aborting now ...*
*Segmentation fault (core dumped)*
*ERROR: loading failed*
** removing ?/usr/local/lib/R/site-library/RQuantLib?*
*The downloaded source packages are in*
* ?/tmp/RtmpKTXorW/downloaded_packages?*
*Warning message:*
*In install.packages("RQuantLib", repos =
"http://cran.rstudio.com/
<http://cran.rstudio.com/>", :*
* installation of package ?RQuantLib? had non-zero exit status*
Next I tried with Dirk Eddelbuettel's advice as follows
sudo apt-get install r-cran-rquantlib
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer
required:
grub-pc-bin libgsasl7 libkyotocabinet16v5 libntlm0
linux-headers-4.4.0-116 linux-headers-4.4.0-116-generic
linux-headers-4.4.0-119 linux-headers-4.4.0-119-generic
linux-headers-4.4.0-121 linux-headers-4.4.0-121-generic
linux-headers-4.4.0-124
linux-headers-4.4.0-124-generic linux-headers-4.4.0-127
linux-headers-4.4.0-127-generic linux-headers-4.4.0-128
linux-headers-4.4.0-128-generic linux-headers-4.4.0-130
linux-headers-4.4.0-130-generic linux-headers-4.4.0-134
linux-headers-4.4.0-134-generic
linux-headers-4.4.0-137 linux-headers-4.4.0-137-generic
linux-headers-4.4.0-138 linux-headers-4.4.0-138-generic
linux-image-4.4.0-116-generic linux-image-4.4.0-119-generic
linux-image-4.4.0-121-generic linux-image-4.4.0-124-generic
linux-image-4.4.0-127-generic
linux-image-4.4.0-128-generic linux-image-4.4.0-130-generic
linux-image-4.4.0-134-generic linux-image-4.4.0-137-generic
linux-image-4.4.0-138-generic mailutils-common
Use 'sudo apt autoremove' to remove them.
The following additional packages will be installed:
libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
Suggested packages:
r-cran-getopt r-cran-inline
The following NEW packages will be installed:
libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
r-cran-rquantlib
0 upgraded, 6 newly installed, 0 to remove and 177 not upgraded.
Need to get 11.2 MB of archives.
After this operation, 52.9 MB of additional disk space will be used.
Do you want to continue? [Y/n] Y
Get:2 http://ppa.launchpad.net/edd/misc/ubuntu xenial/main amd64
libquantlib0v5 amd64 1.10-1xenial1 [7,966 kB]
Get:3 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-littler
0.3.3-1xenial0 [336 kB]
Get:1 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
r-cran-pkgkitten all 0.1.3-1 [17.7 kB]
Get:4 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
r-cran-rcpp amd64 0.12.3-1 [2,073 kB]
Get:6 http://cran.rstudio.com/bin/linux/ubuntu xenial/ littler
0.3.3-1xenial0 [12.5 kB]
Get:5 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
r-cran-rquantlib amd64 0.4.2-1 [805 kB]
Fetched 11.2 MB in 8s (1,321 kB/s)
Selecting previously unselected package libquantlib0v5.
(Reading database ... 552387 files and directories currently installed.)
Preparing to unpack .../libquantlib0v5_1.10-1xenial1_amd64.deb ...
Unpacking libquantlib0v5 (1.10-1xenial1) ...
Selecting previously unselected package r-cran-littler.
Preparing to unpack .../r-cran-littler_0.3.3-1xenial0_amd64.deb ...
Unpacking r-cran-littler (0.3.3-1xenial0) ...
Selecting previously unselected package littler.
Preparing to unpack .../littler_0.3.3-1xenial0_all.deb ...
Unpacking littler (0.3.3-1xenial0) ...
Selecting previously unselected package r-cran-pkgkitten.
Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ...
Unpacking r-cran-pkgkitten (0.1.3-1) ...
Selecting previously unselected package r-cran-rcpp.
Preparing to unpack .../r-cran-rcpp_0.12.3-1_amd64.deb ...
Unpacking r-cran-rcpp (0.12.3-1) ...
Selecting previously unselected package r-cran-rquantlib.
Preparing to unpack .../r-cran-rquantlib_0.4.2-1_amd64.deb ...
Unpacking r-cran-rquantlib (0.4.2-1) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Processing triggers for man-db (2.7.5-1) ...
Setting up libquantlib0v5 (1.10-1xenial1) ...
Setting up r-cran-littler (0.3.3-1xenial0) ...
Setting up littler (0.3.3-1xenial0) ...
Setting up r-cran-pkgkitten (0.1.3-1) ...
Setting up r-cran-rcpp (0.12.3-1) ...
Setting up r-cran-rquantlib (0.4.2-1) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
But it also failed when I tried to load the package in R console.
*> library(RQuantLib)*
*Error: package or namespace load failed for ?RQuantLib? in dyn.load(file,
DLLpath = DLLpath, ...):*
* unable to load shared object
'/usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so':*
* /usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so: undefined symbol:
_ZN8QuantLib11daysBetweenERKNS_4DateES2_*
*> ls('package:RQuantLib')*
*Error in as.environment(pos) : *
* no item called "package:RQuantLib" on the search list*
Any advice on how to correctly install it will be highly helpful. Relevant
R info:
*> sessionInfo()*
*R version 3.4.4 (2018-03-15)*
*Platform: x86_64-pc-linux-gnu (64-bit)*
*Running under: Ubuntu 16.04.4 LTS*
*Matrix products: default*
*BLAS: /usr/lib/libblas/libblas.so.3.6.0*
*LAPACK: /usr/lib/lapack/liblapack.so.3.6.0*
*locale:*
* [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C *
* [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 *
* [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 *
* [7] LC_PAPER=en_US.UTF-8 LC_NAME=C *
* [9] LC_ADDRESS=C LC_TELEPHONE=C *
*[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C *
*attached base packages:*
*[1] stats graphics grDevices utils datasets methods base *
*loaded via a namespace (and not attached):*
*[1] compiler_3.4.4 Rcpp_0.12.19 *
Thanks,
[[alternative HTML version deleted]]
Michael Rutter
2019-Jan-07 02:06 UTC
[R-sig-Debian] Failed to install RQuantLib in Ubuntu machine
On 1/6/19 12:36 PM, Christofer Bogaso wrote:> Hi, > > <This issue was previously posted in R-help, but advised to post here as a > more relevant group> > > I was trying to install RQuantLib in my Ubuntu machine which failed with > below information :Cutting lots of information... Christofer, As the builder of CRAN binaries for a number of releases of Ubuntu, Xenial and RQuantLib never played well together. Even using the current versions of RQquantLib and Quantlib, Xenial produces a seg fault/coredump on Launchpad. I could never get it work, so I don't have any suggestions on how to get it to work on Xenial. I can tell you that there is a binary available for Bionic and R 3.5. You can find it on the c2d4u PPA: https://launchpad.net/~marutter/+archive/ubuntu/c2d4u3.5 Wish I could help more, Michael
Dirk Eddelbuettel
2019-Jan-07 03:47 UTC
[R-sig-Debian] Failed to install RQuantLib in Ubuntu machine
On 6 January 2019 at 21:06, Michael Rutter wrote:
| Cutting lots of information...
|
| Christofer,
|
| As the builder of CRAN binaries for a number of releases of Ubuntu,
| Xenial and RQuantLib never played well together. Even using the current
| versions of RQquantLib and Quantlib, Xenial produces a seg
| fault/coredump on Launchpad. I could never get it work, so I don't have
| any suggestions on how to get it to work on Xenial.
Oh, right. I honestly forgot all that drama. But eg for tests on Travis I
also opted for setting up something newer using Debian testing rather than
the trusted old Ubuntu versions preferred by Travis. So this may actually be
an issue between QuantLib and older distros / older compilers.
| I can tell you that there is a binary available for Bionic and R 3.5.
| You can find it on the c2d4u PPA:
| https://launchpad.net/~marutter/+archive/ubuntu/c2d4u3.5
And there is are Docker containers: one image (rquantlib/ci) I use for
continued integration testing at Travis one image (rquantlib/run) with
QuantLib built into it -- see
https://cloud.docker.com/u/rquantlib/repository/list
Quick example confirming that Martin Luther King day in two weeks in exchange
holiday at NYSE:
edd at rob:~$ docker run --rm -ti rquantlib/run \ # indented for email only
Rscript -e 'library(RQuantLib); \ # ditto
isBusinessDay("UnitedStates/NYSE",
as.Date("2019-01-21"))'
[1] FALSE
edd at rob:~$
I ran that command on one line here.
| Wish I could help more,
You _were_ very helpful. I honestly had forgotten that the older Ubuntus
might create an issue -- running 18.10 here.
Dirk
--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
Hi,
Getting rquantlib working on 16.04 was discussed just two weeks ago here:
https://github.com/eddelbuettel/rquantlib/issues/119
I'll repeat my findings here for convenience.
1. git clone|lballabio/QuantLib
||./autogen.sh ./configure --prefix=$HOME/.local --enable-intraday make
install|
2. git clone|eddelbuettel/rquantlib|and
remove|CXX_STD=CXX11|from|src/Makevars.in|||
3. From the|rquantlib|parent directory, fire up R and execute|,
library(devtools) install() library(RQuantLib)
getHolidayList("UnitedStates", as.Date("2018-12-01"),
as.Date("2019-01-02")) |
On 1/6/19 12:36 PM, Christofer Bogaso wrote:> Hi,
>
> <This issue was previously posted in R-help, but advised to post here as
a
> more relevant group>
>
> I was trying to install RQuantLib in my Ubuntu machine which failed with
> below information :
>
> *> install.packages('RQuantLib',
repos='http://cran.rstudio.com/
> <http://cran.rstudio.com/>', INSTALL_opts =
c('--no-lock'))*
>
> *Installing package into ?/usr/local/lib/R/site-library?*
>
> *(as ?lib? is unspecified)*
>
> *trying URL 'http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz
> <http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz>'*
>
> *Content type 'application/x-gzip' length 189726 bytes (185 KB)*
>
> *==================================================*
>
> *downloaded 185 KB*
>
>
> ** installing *source* package ?RQuantLib? ...*
>
> *** package ?RQuantLib? successfully unpacked and MD5 sums checked*
>
> *checking whether the C++ compiler works... yes*
>
> *checking for C++ compiler default output file name... a.out*
>
> *checking for suffix of executables... *
>
> *checking whether we are cross compiling... no*
>
> *checking for suffix of object files... o*
>
> *checking whether we are using the GNU C++ compiler... yes*
>
> *checking whether g++ accepts -g... yes*
>
> *checking how to run the C++ preprocessor... g++ -E*
>
> *checking whether we are using the GNU C++ compiler... (cached) yes*
>
> *checking whether g++ accepts -g... (cached) yes*
>
> *checking for R... yes*
>
> *checking for quantlib-config... yes*
>
> *checking for Boost development files... yes*
>
> *checking for minimal Boost version... yes*
>
> *configure: creating ./config.status*
>
> *config.status: creating src/Makevars*
>
> *Completed configuration and ready to build.*
>
> *** libs*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> RcppExports.cpp -o RcppExports.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> affine.cpp -o affine.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> asian.cpp -o asian.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> barrier_binary.cpp -o barrier_binary.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> bermudan.cpp -o bermudan.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> bonds.cpp -o bonds.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> calendars.cpp -o calendars.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> curves.cpp -o curves.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> dates.cpp -o dates.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> daycounter.cpp -o daycounter.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> discount.cpp -o discount.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> hullwhite.cpp -o hullwhite.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> implieds.cpp -o implieds.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> modules.cpp -o modules.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> sabr.cpp -o sabr.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> schedule.cpp -o schedule.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> utils.cpp -o utils.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> vanilla.cpp -o vanilla.o*
>
> *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
> -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
> -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
> -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include
> -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
> -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
> zero.cpp -o zero.o*
>
> *g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
> -Wl,-z,relro -o RQuantLib.so RcppExports.o affine.o asian.o
> barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o
> daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o schedule.o
> utils.o vanilla.o zero.o -L/usr/local/lib -lQuantLib -fopenmp
> -L/usr/lib/R/lib -lR*
>
> *installing to /usr/local/lib/R/site-library/RQuantLib/libs*
>
> *** R*
>
> *** data*
>
> *** demo*
>
> *** inst*
>
> *** preparing package for lazy loading*
>
> *** help*
>
> **** installing help indices*
>
> *** building package indices*
>
> *** testing if installed package can be loaded*
>
>
> * *** caught segfault ****
>
> *address 0x7f255e91a9a0, cause 'invalid permissions'*
>
>
> *Traceback:*
>
> * 1: dyn.load(file, DLLpath = DLLpath, ...)*
>
> * 2: library.dynam(lib, package, package.lib)*
>
> * 3: loadNamespace(package, lib.loc)*
>
> * 4: doTryCatch(return(expr), name, parentenv, handler)*
>
> * 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
>
> * 6: tryCatchList(expr, classes, parentenv, handlers)*
>
> * 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc
ns <-
> loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos = pos,
> deps)}, error = function(e) { P <- if (!is.null(cc <-
conditionCall(e)))
> paste(" in", deparse(cc)[1L]) else ""
msg <-
> gettextf("package or namespace load failed for %s%s:\n %s",
> sQuote(package), P, conditionMessage(e)) if (logical.return)
> message(paste("Error:", msg), domain = NA) else stop(msg,
call. = FALSE,
> domain = NA)})*
>
> * 8: library(pkg_name, lib.loc = lib, character.only = TRUE, logical.return
> = TRUE)*
>
> * 9: withCallingHandlers(expr, packageStartupMessage = function(c)
> invokeRestart("muffleMessage"))*
>
> *10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
> character.only = TRUE, logical.return = TRUE))*
>
> *11: doTryCatch(return(expr), name, parentenv, handler)*
>
> *12: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
>
> *13: tryCatchList(expr, classes, parentenv, handlers)*
>
> *14: tryCatch(expr, error = function(e) { call <- conditionCall(e)
if
> (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
> call <- sys.call(-4L) dcall <- deparse(call)[1L]
> prefix <- paste("Error in", dcall, ": ") LONG
<- 75L msg <-
> conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]]
w <- 14L
> + nchar(dcall, type = "w") + nchar(sm[1L], type = "w")
if (is.na
> <http://is.na>(w)) w <- 14L + nchar(dcall, type =
"b") +
> nchar(sm[1L], type = "b") if (w > LONG)
> prefix <- paste0(prefix, "\n ") } else prefix <-
"Error : " msg
> <- paste0(prefix, conditionMessage(e), "\n")
> .Internal(seterrmessage(msg[1L])) if (!silent &&
> identical(getOption("show.error.messages"), TRUE)) {
> cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
> invisible(structure(msg, class = "try-error", condition = e))})*
>
> *15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
> character.only = TRUE, logical.return = TRUE)))*
>
> *16: tools:::.test_load_package("RQuantLib",
> "/usr/local/lib/R/site-library")*
>
> *An irrecoverable exception occurred. R is aborting now ...*
>
> *Segmentation fault (core dumped)*
>
> *ERROR: loading failed*
>
> ** removing ?/usr/local/lib/R/site-library/RQuantLib?*
>
>
> *The downloaded source packages are in*
>
> * ?/tmp/RtmpKTXorW/downloaded_packages?*
>
> *Warning message:*
>
> *In install.packages("RQuantLib", repos =
"http://cran.rstudio.com/
> <http://cran.rstudio.com/>", :*
>
> * installation of package ?RQuantLib? had non-zero exit status*
>
>
>
> Next I tried with Dirk Eddelbuettel's advice as follows
>
>
> sudo apt-get install r-cran-rquantlib
>
> Reading package lists... Done
>
> Building dependency tree
>
> Reading state information... Done
>
> The following packages were automatically installed and are no longer
> required:
>
> grub-pc-bin libgsasl7 libkyotocabinet16v5 libntlm0
> linux-headers-4.4.0-116 linux-headers-4.4.0-116-generic
> linux-headers-4.4.0-119 linux-headers-4.4.0-119-generic
> linux-headers-4.4.0-121 linux-headers-4.4.0-121-generic
> linux-headers-4.4.0-124
>
> linux-headers-4.4.0-124-generic linux-headers-4.4.0-127
> linux-headers-4.4.0-127-generic linux-headers-4.4.0-128
> linux-headers-4.4.0-128-generic linux-headers-4.4.0-130
> linux-headers-4.4.0-130-generic linux-headers-4.4.0-134
> linux-headers-4.4.0-134-generic
>
> linux-headers-4.4.0-137 linux-headers-4.4.0-137-generic
> linux-headers-4.4.0-138 linux-headers-4.4.0-138-generic
> linux-image-4.4.0-116-generic linux-image-4.4.0-119-generic
> linux-image-4.4.0-121-generic linux-image-4.4.0-124-generic
> linux-image-4.4.0-127-generic
>
> linux-image-4.4.0-128-generic linux-image-4.4.0-130-generic
> linux-image-4.4.0-134-generic linux-image-4.4.0-137-generic
> linux-image-4.4.0-138-generic mailutils-common
>
> Use 'sudo apt autoremove' to remove them.
>
> The following additional packages will be installed:
>
> libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
>
> Suggested packages:
>
> r-cran-getopt r-cran-inline
>
> The following NEW packages will be installed:
>
> libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
> r-cran-rquantlib
>
> 0 upgraded, 6 newly installed, 0 to remove and 177 not upgraded.
>
> Need to get 11.2 MB of archives.
>
> After this operation, 52.9 MB of additional disk space will be used.
>
> Do you want to continue? [Y/n] Y
>
> Get:2 http://ppa.launchpad.net/edd/misc/ubuntu xenial/main amd64
> libquantlib0v5 amd64 1.10-1xenial1 [7,966 kB]
>
> Get:3 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-littler
> 0.3.3-1xenial0 [336 kB]
>
> Get:1 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
> r-cran-pkgkitten all 0.1.3-1 [17.7 kB]
>
> Get:4 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
> r-cran-rcpp amd64 0.12.3-1 [2,073 kB]
>
> Get:6 http://cran.rstudio.com/bin/linux/ubuntu xenial/ littler
> 0.3.3-1xenial0 [12.5 kB]
>
> Get:5 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
> r-cran-rquantlib amd64 0.4.2-1 [805 kB]
>
> Fetched 11.2 MB in 8s (1,321 kB/s)
>
>
>
>
> Selecting previously unselected package libquantlib0v5.
>
> (Reading database ... 552387 files and directories currently installed.)
>
> Preparing to unpack .../libquantlib0v5_1.10-1xenial1_amd64.deb ...
>
> Unpacking libquantlib0v5 (1.10-1xenial1) ...
>
> Selecting previously unselected package r-cran-littler.
>
> Preparing to unpack .../r-cran-littler_0.3.3-1xenial0_amd64.deb ...
>
> Unpacking r-cran-littler (0.3.3-1xenial0) ...
>
> Selecting previously unselected package littler.
>
> Preparing to unpack .../littler_0.3.3-1xenial0_all.deb ...
>
> Unpacking littler (0.3.3-1xenial0) ...
>
> Selecting previously unselected package r-cran-pkgkitten.
>
> Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ...
>
> Unpacking r-cran-pkgkitten (0.1.3-1) ...
>
> Selecting previously unselected package r-cran-rcpp.
>
> Preparing to unpack .../r-cran-rcpp_0.12.3-1_amd64.deb ...
>
> Unpacking r-cran-rcpp (0.12.3-1) ...
>
> Selecting previously unselected package r-cran-rquantlib.
>
> Preparing to unpack .../r-cran-rquantlib_0.4.2-1_amd64.deb ...
>
> Unpacking r-cran-rquantlib (0.4.2-1) ...
>
> Processing triggers for libc-bin (2.23-0ubuntu10) ...
>
> Processing triggers for man-db (2.7.5-1) ...
>
> Setting up libquantlib0v5 (1.10-1xenial1) ...
>
> Setting up r-cran-littler (0.3.3-1xenial0) ...
>
> Setting up littler (0.3.3-1xenial0) ...
>
> Setting up r-cran-pkgkitten (0.1.3-1) ...
>
> Setting up r-cran-rcpp (0.12.3-1) ...
>
> Setting up r-cran-rquantlib (0.4.2-1) ...
>
> Processing triggers for libc-bin (2.23-0ubuntu10) ...
>
>
> But it also failed when I tried to load the package in R console.
>
>
> *> library(RQuantLib)*
>
> *Error: package or namespace load failed for ?RQuantLib? in dyn.load(file,
> DLLpath = DLLpath, ...):*
>
> * unable to load shared object
> '/usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so':*
>
> * /usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so: undefined symbol:
> _ZN8QuantLib11daysBetweenERKNS_4DateES2_*
>
> *> ls('package:RQuantLib')*
>
> *Error in as.environment(pos) : *
>
> * no item called "package:RQuantLib" on the search list*
>
>
>
> Any advice on how to correctly install it will be highly helpful. Relevant
> R info:
>
>
> *> sessionInfo()*
>
> *R version 3.4.4 (2018-03-15)*
>
> *Platform: x86_64-pc-linux-gnu (64-bit)*
>
> *Running under: Ubuntu 16.04.4 LTS*
>
>
> *Matrix products: default*
>
> *BLAS: /usr/lib/libblas/libblas.so.3.6.0*
>
> *LAPACK: /usr/lib/lapack/liblapack.so.3.6.0*
>
>
> *locale:*
>
> * [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C *
>
> * [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 *
>
> * [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 *
>
> * [7] LC_PAPER=en_US.UTF-8 LC_NAME=C *
>
> * [9] LC_ADDRESS=C LC_TELEPHONE=C *
>
> *[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C *
>
>
> *attached base packages:*
>
> *[1] stats graphics grDevices utils datasets methods base *
>
>
> *loaded via a namespace (and not attached):*
>
> *[1] compiler_3.4.4 Rcpp_0.12.19 *
>
>
> Thanks,
>
> [[alternative HTML version deleted]]
>
> _______________________________________________
> R-SIG-Debian mailing list
> R-SIG-Debian at r-project.org
> https://stat.ethz.ch/mailman/listinfo/r-sig-debian
Dirk Eddelbuettel
2019-Jan-07 04:32 UTC
[R-sig-Debian] Failed to install RQuantLib in Ubuntu machine
On 6 January 2019 at 23:14, dick wrote:
| Hi,
|
| Getting rquantlib working on 16.04 was discussed just two weeks ago here:
| https://github.com/eddelbuettel/rquantlib/issues/119
|
| I'll repeat my findings here for convenience.
|
| 1. git clone|lballabio/QuantLib
|
| ||./autogen.sh ./configure --prefix=$HOME/.local --enable-intraday make
| install|
I tend to prepare 'backports' of my Debian package of libquantlib via
the PPA
at https://launchpad.net/~edd/+archive/ubuntu/r-3.5/+packages but I only
turned 18.04 and 18.10 on as that is what I used....
Maybe someone wants to volunteer maintaining this across the major LTS stacks.
| 2. git clone|eddelbuettel/rquantlib|and
| remove|CXX_STD=CXX11|from|src/Makevars.in|||
As I said in the issue ticket, I am not a fan of this as upstream moved
towards C++11, not away, from it, and the compiler should be recent enough
(as it is more recent than what Rtools uses on Windows). Maybe you should
discuss this with QuantLib upstream.
| 3. From the|rquantlib|parent directory, fire up R and execute|,
| library(devtools) install() library(RQuantLib)
| getHolidayList("UnitedStates", as.Date("2018-12-01"),
| as.Date("2019-01-02")) |
Can't argue with "it works" ... but I still prefer cleaner work on
more
recent distro releases. But whatever floats your boat.
Dirk
| On 1/6/19 12:36 PM, Christofer Bogaso wrote:
| > Hi,
| >
| > <This issue was previously posted in R-help, but advised to post here
as a
| > more relevant group>
| >
| > I was trying to install RQuantLib in my Ubuntu machine which failed with
| > below information :
| >
| > *> install.packages('RQuantLib',
repos='http://cran.rstudio.com/
| > <http://cran.rstudio.com/>', INSTALL_opts =
c('--no-lock'))*
| >
| > *Installing package into ?/usr/local/lib/R/site-library?*
| >
| > *(as ?lib? is unspecified)*
| >
| > *trying URL
'http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz
| > <http://cran.rstudio.com/src/contrib/RQuantLib_0.4.7.tar.gz>'*
| >
| > *Content type 'application/x-gzip' length 189726 bytes (185 KB)*
| >
| > *==================================================*
| >
| > *downloaded 185 KB*
| >
| >
| > ** installing *source* package ?RQuantLib? ...*
| >
| > *** package ?RQuantLib? successfully unpacked and MD5 sums checked*
| >
| > *checking whether the C++ compiler works... yes*
| >
| > *checking for C++ compiler default output file name... a.out*
| >
| > *checking for suffix of executables... *
| >
| > *checking whether we are cross compiling... no*
| >
| > *checking for suffix of object files... o*
| >
| > *checking whether we are using the GNU C++ compiler... yes*
| >
| > *checking whether g++ accepts -g... yes*
| >
| > *checking how to run the C++ preprocessor... g++ -E*
| >
| > *checking whether we are using the GNU C++ compiler... (cached) yes*
| >
| > *checking whether g++ accepts -g... (cached) yes*
| >
| > *checking for R... yes*
| >
| > *checking for quantlib-config... yes*
| >
| > *checking for Boost development files... yes*
| >
| > *checking for minimal Boost version... yes*
| >
| > *configure: creating ./config.status*
| >
| > *config.status: creating src/Makevars*
| >
| > *Completed configuration and ready to build.*
| >
| > *** libs*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > RcppExports.cpp -o RcppExports.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > affine.cpp -o affine.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > asian.cpp -o asian.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > barrier_binary.cpp -o barrier_binary.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > bermudan.cpp -o bermudan.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > bonds.cpp -o bonds.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > calendars.cpp -o calendars.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > curves.cpp -o curves.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > dates.cpp -o dates.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > daycounter.cpp -o daycounter.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > discount.cpp -o discount.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > hullwhite.cpp -o hullwhite.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > implieds.cpp -o implieds.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > modules.cpp -o modules.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > sabr.cpp -o sabr.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > schedule.cpp -o schedule.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > utils.cpp -o utils.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > vanilla.cpp -o vanilla.o*
| >
| > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG
| > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2
| > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time
| > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive
-I../inst/include
| > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong
| > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c
| > zero.cpp -o zero.o*
| >
| > *g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions
| > -Wl,-z,relro -o RQuantLib.so RcppExports.o affine.o asian.o
| > barrier_binary.o bermudan.o bonds.o calendars.o curves.o dates.o
| > daycounter.o discount.o hullwhite.o implieds.o modules.o sabr.o
schedule.o
| > utils.o vanilla.o zero.o -L/usr/local/lib -lQuantLib -fopenmp
| > -L/usr/lib/R/lib -lR*
| >
| > *installing to /usr/local/lib/R/site-library/RQuantLib/libs*
| >
| > *** R*
| >
| > *** data*
| >
| > *** demo*
| >
| > *** inst*
| >
| > *** preparing package for lazy loading*
| >
| > *** help*
| >
| > **** installing help indices*
| >
| > *** building package indices*
| >
| > *** testing if installed package can be loaded*
| >
| >
| > * *** caught segfault ****
| >
| > *address 0x7f255e91a9a0, cause 'invalid permissions'*
| >
| >
| > *Traceback:*
| >
| > * 1: dyn.load(file, DLLpath = DLLpath, ...)*
| >
| > * 2: library.dynam(lib, package, package.lib)*
| >
| > * 3: loadNamespace(package, lib.loc)*
| >
| > * 4: doTryCatch(return(expr), name, parentenv, handler)*
| >
| > * 5: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
| >
| > * 6: tryCatchList(expr, classes, parentenv, handlers)*
| >
| > * 7: tryCatch({ attr(package, "LibPath") <- which.lib.loc
ns <-
| > loadNamespace(package, lib.loc) env <- attachNamespace(ns, pos =
pos,
| > deps)}, error = function(e) { P <- if (!is.null(cc <-
conditionCall(e)))
| > paste(" in", deparse(cc)[1L]) else ""
msg <-
| > gettextf("package or namespace load failed for %s%s:\n %s",
| > sQuote(package), P, conditionMessage(e)) if (logical.return)
| > message(paste("Error:", msg), domain = NA) else stop(msg,
call. = FALSE,
| > domain = NA)})*
| >
| > * 8: library(pkg_name, lib.loc = lib, character.only = TRUE,
logical.return
| > = TRUE)*
| >
| > * 9: withCallingHandlers(expr, packageStartupMessage = function(c)
| > invokeRestart("muffleMessage"))*
| >
| > *10: suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
| > character.only = TRUE, logical.return = TRUE))*
| >
| > *11: doTryCatch(return(expr), name, parentenv, handler)*
| >
| > *12: tryCatchOne(expr, names, parentenv, handlers[[1L]])*
| >
| > *13: tryCatchList(expr, classes, parentenv, handlers)*
| >
| > *14: tryCatch(expr, error = function(e) { call <- conditionCall(e)
if
| > (!is.null(call)) { if (identical(call[[1L]], quote(doTryCatch)))
| > call <- sys.call(-4L) dcall <- deparse(call)[1L]
| > prefix <- paste("Error in", dcall, ": ")
LONG <- 75L msg <-
| > conditionMessage(e) sm <- strsplit(msg, "\n")[[1L]]
w <- 14L
| > + nchar(dcall, type = "w") + nchar(sm[1L], type =
"w") if (is.na
| > <http://is.na>(w)) w <- 14L + nchar(dcall, type =
"b") +
| > nchar(sm[1L], type = "b") if (w >
LONG)
| > prefix <- paste0(prefix, "\n ") } else prefix <-
"Error : " msg
| > <- paste0(prefix, conditionMessage(e), "\n")
| > .Internal(seterrmessage(msg[1L])) if (!silent &&
| > identical(getOption("show.error.messages"), TRUE)) {
| > cat(msg, file = outFile) .Internal(printDeferredWarnings()) }
| > invisible(structure(msg, class = "try-error", condition =
e))})*
| >
| > *15: try(suppressPackageStartupMessages(library(pkg_name, lib.loc = lib,
| > character.only = TRUE, logical.return = TRUE)))*
| >
| > *16: tools:::.test_load_package("RQuantLib",
| > "/usr/local/lib/R/site-library")*
| >
| > *An irrecoverable exception occurred. R is aborting now ...*
| >
| > *Segmentation fault (core dumped)*
| >
| > *ERROR: loading failed*
| >
| > ** removing ?/usr/local/lib/R/site-library/RQuantLib?*
| >
| >
| > *The downloaded source packages are in*
| >
| > * ?/tmp/RtmpKTXorW/downloaded_packages?*
| >
| > *Warning message:*
| >
| > *In install.packages("RQuantLib", repos =
"http://cran.rstudio.com/
| > <http://cran.rstudio.com/>", :*
| >
| > * installation of package ?RQuantLib? had non-zero exit status*
| >
| >
| >
| > Next I tried with Dirk Eddelbuettel's advice as follows
| >
| >
| > sudo apt-get install r-cran-rquantlib
| >
| > Reading package lists... Done
| >
| > Building dependency tree
| >
| > Reading state information... Done
| >
| > The following packages were automatically installed and are no longer
| > required:
| >
| > grub-pc-bin libgsasl7 libkyotocabinet16v5 libntlm0
| > linux-headers-4.4.0-116 linux-headers-4.4.0-116-generic
| > linux-headers-4.4.0-119 linux-headers-4.4.0-119-generic
| > linux-headers-4.4.0-121 linux-headers-4.4.0-121-generic
| > linux-headers-4.4.0-124
| >
| > linux-headers-4.4.0-124-generic linux-headers-4.4.0-127
| > linux-headers-4.4.0-127-generic linux-headers-4.4.0-128
| > linux-headers-4.4.0-128-generic linux-headers-4.4.0-130
| > linux-headers-4.4.0-130-generic linux-headers-4.4.0-134
| > linux-headers-4.4.0-134-generic
| >
| > linux-headers-4.4.0-137 linux-headers-4.4.0-137-generic
| > linux-headers-4.4.0-138 linux-headers-4.4.0-138-generic
| > linux-image-4.4.0-116-generic linux-image-4.4.0-119-generic
| > linux-image-4.4.0-121-generic linux-image-4.4.0-124-generic
| > linux-image-4.4.0-127-generic
| >
| > linux-image-4.4.0-128-generic linux-image-4.4.0-130-generic
| > linux-image-4.4.0-134-generic linux-image-4.4.0-137-generic
| > linux-image-4.4.0-138-generic mailutils-common
| >
| > Use 'sudo apt autoremove' to remove them.
| >
| > The following additional packages will be installed:
| >
| > libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
| >
| > Suggested packages:
| >
| > r-cran-getopt r-cran-inline
| >
| > The following NEW packages will be installed:
| >
| > libquantlib0v5 littler r-cran-littler r-cran-pkgkitten r-cran-rcpp
| > r-cran-rquantlib
| >
| > 0 upgraded, 6 newly installed, 0 to remove and 177 not upgraded.
| >
| > Need to get 11.2 MB of archives.
| >
| > After this operation, 52.9 MB of additional disk space will be used.
| >
| > Do you want to continue? [Y/n] Y
| >
| > Get:2 http://ppa.launchpad.net/edd/misc/ubuntu xenial/main amd64
| > libquantlib0v5 amd64 1.10-1xenial1 [7,966 kB]
| >
| > Get:3 http://cran.rstudio.com/bin/linux/ubuntu xenial/ r-cran-littler
| > 0.3.3-1xenial0 [336 kB]
| >
| > Get:1 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
| > r-cran-pkgkitten all 0.1.3-1 [17.7 kB]
| >
| > Get:4 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
| > r-cran-rcpp amd64 0.12.3-1 [2,073 kB]
| >
| > Get:6 http://cran.rstudio.com/bin/linux/ubuntu xenial/ littler
| > 0.3.3-1xenial0 [12.5 kB]
| >
| > Get:5 http://sgp1.mirrors.digitalocean.com/ubuntu xenial/universe amd64
| > r-cran-rquantlib amd64 0.4.2-1 [805 kB]
| >
| > Fetched 11.2 MB in 8s (1,321 kB/s)
| >
| >
| >
| >
| > Selecting previously unselected package libquantlib0v5.
| >
| > (Reading database ... 552387 files and directories currently installed.)
| >
| > Preparing to unpack .../libquantlib0v5_1.10-1xenial1_amd64.deb ...
| >
| > Unpacking libquantlib0v5 (1.10-1xenial1) ...
| >
| > Selecting previously unselected package r-cran-littler.
| >
| > Preparing to unpack .../r-cran-littler_0.3.3-1xenial0_amd64.deb ...
| >
| > Unpacking r-cran-littler (0.3.3-1xenial0) ...
| >
| > Selecting previously unselected package littler.
| >
| > Preparing to unpack .../littler_0.3.3-1xenial0_all.deb ...
| >
| > Unpacking littler (0.3.3-1xenial0) ...
| >
| > Selecting previously unselected package r-cran-pkgkitten.
| >
| > Preparing to unpack .../r-cran-pkgkitten_0.1.3-1_all.deb ...
| >
| > Unpacking r-cran-pkgkitten (0.1.3-1) ...
| >
| > Selecting previously unselected package r-cran-rcpp.
| >
| > Preparing to unpack .../r-cran-rcpp_0.12.3-1_amd64.deb ...
| >
| > Unpacking r-cran-rcpp (0.12.3-1) ...
| >
| > Selecting previously unselected package r-cran-rquantlib.
| >
| > Preparing to unpack .../r-cran-rquantlib_0.4.2-1_amd64.deb ...
| >
| > Unpacking r-cran-rquantlib (0.4.2-1) ...
| >
| > Processing triggers for libc-bin (2.23-0ubuntu10) ...
| >
| > Processing triggers for man-db (2.7.5-1) ...
| >
| > Setting up libquantlib0v5 (1.10-1xenial1) ...
| >
| > Setting up r-cran-littler (0.3.3-1xenial0) ...
| >
| > Setting up littler (0.3.3-1xenial0) ...
| >
| > Setting up r-cran-pkgkitten (0.1.3-1) ...
| >
| > Setting up r-cran-rcpp (0.12.3-1) ...
| >
| > Setting up r-cran-rquantlib (0.4.2-1) ...
| >
| > Processing triggers for libc-bin (2.23-0ubuntu10) ...
| >
| >
| > But it also failed when I tried to load the package in R console.
| >
| >
| > *> library(RQuantLib)*
| >
| > *Error: package or namespace load failed for ?RQuantLib? in
dyn.load(file,
| > DLLpath = DLLpath, ...):*
| >
| > * unable to load shared object
| > '/usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so':*
| >
| > * /usr/lib/R/site-library/RQuantLib/libs/RQuantLib.so: undefined symbol:
| > _ZN8QuantLib11daysBetweenERKNS_4DateES2_*
| >
| > *> ls('package:RQuantLib')*
| >
| > *Error in as.environment(pos) : *
| >
| > * no item called "package:RQuantLib" on the search list*
| >
| >
| >
| > Any advice on how to correctly install it will be highly helpful.
Relevant
| > R info:
| >
| >
| > *> sessionInfo()*
| >
| > *R version 3.4.4 (2018-03-15)*
| >
| > *Platform: x86_64-pc-linux-gnu (64-bit)*
| >
| > *Running under: Ubuntu 16.04.4 LTS*
| >
| >
| > *Matrix products: default*
| >
| > *BLAS: /usr/lib/libblas/libblas.so.3.6.0*
| >
| > *LAPACK: /usr/lib/lapack/liblapack.so.3.6.0*
| >
| >
| > *locale:*
| >
| > * [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C *
| >
| > * [3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8 *
| >
| > * [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8 *
| >
| > * [7] LC_PAPER=en_US.UTF-8 LC_NAME=C *
| >
| > * [9] LC_ADDRESS=C LC_TELEPHONE=C *
| >
| > *[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C *
| >
| >
| > *attached base packages:*
| >
| > *[1] stats graphics grDevices utils datasets methods base
*
| >
| >
| > *loaded via a namespace (and not attached):*
| >
| > *[1] compiler_3.4.4 Rcpp_0.12.19 *
| >
| >
| > Thanks,
| >
| > [[alternative HTML version deleted]]
| >
| > _______________________________________________
| > R-SIG-Debian mailing list
| > R-SIG-Debian at r-project.org
| > https://stat.ethz.ch/mailman/listinfo/r-sig-debian
|
| _______________________________________________
| R-SIG-Debian mailing list
| R-SIG-Debian at r-project.org
| https://stat.ethz.ch/mailman/listinfo/r-sig-debian
--
http://dirk.eddelbuettel.com | @eddelbuettel | edd at debian.org
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