similar to: Failed to install RQuantLib in Ubuntu machine

Hi, Getting rquantlib working on 16.04 was discussed just two weeks ago here: https://github.com/eddelbuettel/rquantlib/issues/119 I'll repeat my findings here for convenience. 1. git clone|lballabio/QuantLib ||./autogen.sh ./configure --prefix=$HOME/.local --enable-intraday make install| 2. git clone|eddelbuettel/rquantlib|and remove|CXX_STD=CXX11|from|src/Makevars.in||| 3. From

This looks like the result of including a C++ system header inside an extern "C" block. There is no evidence of this happening in the current version 2.22.1. However, it did happen in the previous version 2.22 via the chain of inclusions: MCMCglmmcc.h -> cs.h -> R.h -> various C++ system headers See Writing R Extensions P 108. I would check that the people reporting this bug

Hi All, Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Mac OS X El Capitan (version/compiler unspecified) The issue seems to be with mixing C/C++ with the repeated error: /usr/include/c++/5/bits/cpp_type_traits.h:118:3:

After upgrading to Ubuntu 16.10, which brings GCC 6, I've noticed that packages are compiled in C++14 mode by default. Here's what a g++ command for compiling one of Rcpp's modules look like on my system: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c

On 12 November 2016 at 07:59, Dirk Eddelbuettel wrote: | | On 12 November 2016 at 14:23, Kirill M?ller wrote: | | Thanks. I have now CXX = g++ -std=c++98 in my /etc/R/Makeconf, it's | | picked up properly. I can only assume that the last -std= option wins if | | more than one are given on the same command line [1]. | | Good to know it works. | | I am still a little puzzled why it was

Did you istall the tcl- and tk-devel packages? Best, Albrecht -- Albrecht Kauffmann alkauffm at fastmail.fm Am Sa, 18. Nov 2017, um 05:00, schrieb Erin Hodgess: > When I have compiled from sourced on Ubuntu, I did NOT include the > "with-tcltk" and it worked fine. Did you try that, please? > > Thanks, > Erin > > > On Fri, Nov 17, 2017 at 6:34 PM, Rolf

Dear All, I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same

On Wed, Apr 5, 2017 at 2:24 PM, Robert McGehee <rmcgehee at walleyetrading.net> wrote: > Winston, > I had a similar experience to you tracking down an insanely difficult bug > in my R code that "disappeared" whenever slight changes were made to the > script (e.g. like adding cat() statements). In my case, it coincided with > my over-eager compilation of R and its

I'm running Ubuntu 17.04 and R 3.4.1. I installed the latter yesterday, so I presume it's the latest version. I want to install Tidyverse, which I've spent many happy hours with under Windows. But when I do install.packages("tidyverse") , I get errors about unrecognized command line options to gcc. These start when the install hits the colorspace and munsell packages.

Hello everybody, First a big thanks for tinc-vpn I am still using it next to wireguard and openvpn. I am having a setup where the tinc debian appliance is at 100% cpu load doing about 7.5MB/s. Compression = 9 PMTU = 1400 PMTUDiscovery = yes Cipher = aes-128-cbc How can I pick a cipher that is the fasted for my CPU and don't create a CPU bottleneck at 100%. Kind regards, Jelle de Jong

Thanks. I have now CXX = g++ -std=c++98 in my /etc/R/Makeconf, it's picked up properly. I can only assume that the last -std= option wins if more than one are given on the same command line [1]. -Kirill [1] http://stackoverflow.com/q/40563269/946850 On 12.11.2016 03:01, Dirk Eddelbuettel wrote: > On 11 November 2016 at 23:48, Kirill M?ller wrote: > | After upgrading to Ubuntu

Hi, What is the difference between the R installation from source and the R installation from ubuntu repositories. Specifically when I install R-3.1.1 on ubuntu 14.04 from sources ldflags and CXXFLAGS are different that those from the installation from a repo. Installation from sources: R CMD config --ldflags -Wl,--export-dynamic -fopenmp -L/home/prana/prana_R/third-party/install/lib/R/lib

Hello, to build + packages dovecot I use the usual Debian tool chain. That includes build with selected GCC options and running lintian. I notice since a long time (read: many earlier versions, up to 2.2.35) this lintian warnings: I: dovecot-core: hardening-no-fortify-functions usr/lib/dovecot/auth N: N: This package provides an ELF binary that lacks the use of fortified libc N:

Hi, After loading R 4.0.0 on Ubuntu 20.04. R version 4.0.0 (2020-04-24) -- "Arbor Day" Copyright (C) 2020 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()'

Dear all, I have had some rather serious difficulties getting graphics and analysis packages to load in R on my new Ubuntu Install. The trouble seems to begin when attempting to install TMB. I have done a full purge of r-base r-base-dev and r-base-core and reinstalled the newest version of RStudio (not that this should matter). I'm not sure what to try next. many thanks! Brandon Z >

Hi, I was trying install rJava package but failed to install with below error: *trying URL 'https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz <https://cloud.r-project.org/src/contrib/rJava_0.9-11.tar.gz>'* *Content type 'application/x-gzip' length 675188 bytes (659 KB)* *==================================================* *downloaded 659 KB* ** installing

Hi, I have some confusion in applying a function over a column. Here's my function. I just need to shift non-March month-ends to March month-ends. Initially I tried seq.dates, but one cannot give a negative increment (decrement) here. return(as.Date(seq.dates(format(xdate,"%m/%d/%Y"),by="months",len=4)[4]) ) Hence this simple function: > mydate <-

Does anybody know why two "-g" flags appear in the call to gcc in R CMD SHLIB Example: gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -fpic *-g* -O2 -fstack-protector --param=ssp-buffer-size=4 -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 *-g* -c c_file1.c -o c_object1.o Surely it need only be listed once? Alan [[alternative HTML version deleted]]

Dear R-devel: The Cluster administrators at KU got enthusiastic about testing R-3.2.2 with Intel MKL when I asked for some BLAS integration. Below I forward a performance report, which is encouraging, and thought you would like to know the numbers. Appears to my untrained eye there are some extraordinary speedups on Cholesky decomposition, determinants, and matrix inversion. They had

Hi Bob, I don't know what is the cause of your trouble but try this: 1. Download the zip of package. 2. And install it from local zip files. This you find on the Packages menu. Hope it helps OA On Fri, Dec 29, 2017 at 10:31 AM, rsherry8 <rsherry8 at comcast.net> wrote: > Joshua, > > Thanks for the response. When you said at least version 3.4.0, I upgraded > to 3.4.2