search for: wdate

...mpany-reporting dates to March. > Set2March <- function(xdate){ + # Combines non-March months into March months: + # Dec2006 -> Mar2007 + # Mar2006 -> Mar2006 + # Jun2006 -> Mar2006 + # Sep2006 -> Mar2006 + # VERY Specific code. + Month <- format(xdate,"%m") + wDate <- month.day.year(julian(xdate)) + if (Month=="12"){ + wDate$year <- wDate$year + 1 + wDate$month <- 3 + }else + if (Month=="06"){ + wDate$month <- 3 + }else + if (Month=="09"){ + wDate$month <- 3 +...

Hi All, Users have contacted me because they can not build MCMCglmm from source. All are using R 3.3.0 on various machines with different compilers gcc (Ubuntu 5.4.0-6ubuntu1~16.04.2) 5.4.0 g++ (Ubuntu 4.8.4-2ubuntu1~14.04.3) 4.8.4 Mac OS X El Capitan (version/compiler unspecified) The issue seems to be with mixing C/C++ with the repeated error: /usr/include/c++/5/bits/cpp_type_traits.h:118:3:

...talling to library ?/tmp/RcppDepends/lib? > * installing *source* package ?MCMCglmm? ... > ** package ?MCMCglmm? successfully unpacked and MD5 sums checked > ** libs > gcc -I/usr/share/R/include -DNDEBUG??????-fpic??-g -O2 -fstack- > protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g??-O3 -Wall -pipe -pedantic -std=gnu99??-O3 > -pipe -std=gnu99 -Wno-maybe-uninitialized -Wno-unused-but-set- > variable -c cs_add.c -o cs_add.o > gcc -I/usr/share/R/include -DNDEBUG??????-fpic??-g -O2 -fstack- > protector-strong -Wformat -Werror=format-se...

...Cglmm_2.22.1.tar.gz * installing to library ?/tmp/RcppDepends/lib? * installing *source* package ?MCMCglmm? ... ** package ?MCMCglmm? successfully unpacked and MD5 sums checked ** libs gcc -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -O3 -Wall -pipe -pedantic -std=gnu99 -O3 -pipe -std=gnu99 -Wno-maybe-uninitialized -Wno-unused-but-set-variable -c cs_add.c -o cs_add.o gcc -I/usr/share/R/include -DNDEBUG -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTI...

...creating ./config.status* *config.status: creating src/Makevars* *Completed configuration and ready to build.* *** libs* *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o* *g++ -std=gnu++11 -I/usr/share/R/include...

...atus: creating src/Makevars* > > *Completed configuration and ready to build.* > > *** libs* > > *g++ -std=gnu++11 -I/usr/share/R/include -DNDEBUG > -I"/usr/local/lib/R/site-library/Rcpp/include" -g -O2 > -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > -D_FORTIFY_SOURCE=2 -g -I/usr/local/include -fpermissive -I../inst/include > -I. -DBOOST_NO_AUTO_PTR -fopenmp -fpic -g -O2 -fstack-protector-strong > -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c > RcppExports.cpp -o RcppExports.o* > > *g++ -std=g...

...uild_alias=x86_64-linux-gnu' 'R_PRINTCMD=/usr/bin/lpr' 'R_PAPERSIZE=letter' 'R_BROWSER=xdg-open' 'LIBnn=lib' 'JAVA_HOME=/usr/lib/jvm/default-java' 'CC=gcc -std=gnu99' 'CFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g' 'LDFLAGS=-Wl,-Bsymbolic-functions -Wl,-z,relro' 'CPPFLAGS=' 'F77=gfortran' 'FFLAGS=-g -O2 -fstack-protector-strong' 'CXX=g++' 'CXXFLAGS=-g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FO...

On 12 November 2016 at 07:59, Dirk Eddelbuettel wrote: | | On 12 November 2016 at 14:23, Kirill M?ller wrote: | | Thanks. I have now CXX = g++ -std=c++98 in my /etc/R/Makeconf, it's | | picked up properly. I can only assume that the last -std= option wins if | | more than one are given on the same command line [1]. | | Good to know it works. | | I am still a little puzzled why it was

Did you istall the tcl- and tk-devel packages? Best, Albrecht -- Albrecht Kauffmann alkauffm at fastmail.fm Am Sa, 18. Nov 2017, um 05:00, schrieb Erin Hodgess: > When I have compiled from sourced on Ubuntu, I did NOT include the > "with-tcltk" and it worked fine. Did you try that, please? > > Thanks, > Erin > > > On Fri, Nov 17, 2017 at 6:34 PM, Rolf

Dear All, I am building R from source[1], following what is done in "rules" for building Debian's R. But the R I generate, in contrast to the standard Debian's R, will not change the BLAS and LAPACK libraries it uses when I change them via "update-alternatives". I have no idea what I am doing wrong (but, somehow, I've been quite capable of making the same

...sell packages. I'll show an example at the end of this post. I've not found anyone else who had exactly that problem on Ubuntu 17.04. But posts from people with similar problems suggest that my gcc might be a version that's too old to recognise the options -fstack-protector-strong and -Wdate-time. Possible work-arounds that I've thought of: 1) Find an older version of Tidyverse that doesn't need those compiler options. 2) Upgrade my Ubuntu's gcc so that whichever one Tidyverse needs becomes the default. But I don't know whether that would nuke other software on my ma...

...cessfully unpacked and MD5 sums checked** libsgcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c external_metis.c -o external_metis.o gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/library/Matrix/include" -I"/home/drz/R/x86_64-pc-linux-gnu-library/3.4/RcppEigen/include" -fopenmp -fpic -g -O2 -fstack-protector-strong -Wformat -W...

...I've noticed that packages are compiled in C++14 mode by default. Here's what a g++ command for compiling one of Rcpp's modules look like on my system: g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o According to GCC news [1], the default is now C++14 if no -std is given. R-admin suggests adapting the configuration for GCC 6 [2]. I'm using r-base-core in version 3.3.2-1xenial0 from the Ubuntu repo [3]. Please advise. Best regar...

...o's encountered an issue like this. "Insanely difficult" is an apt description. :) I've been using the rocker/r-devel for testing. It compiles R with the following CFLAGS: -g -O2 -fdebug-prefix-map=/build/r-base-3.3.3=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g It looks like it gets those settings from running R CMD config CFLAGS with the already-installed version of R (3.3.3) which comes from a .deb package. https://github.com/rocker-org/rocker/blob/master/r-devel/Dockerfile#L76 I've also compiled R (again, in Docker)...

..._ENDIAN -DOPENSSL_PIC -DOPENSSL_CPUID_OBJ -DOPENSSL_IA32_SSE2 -DOPENSSL_BN_ASM_MONT -DOPENSSL_BN_ASM_MONT5 -DOPENSSL_BN_ASM_GF2m -DSHA1_ASM -DSHA256_ASM -DSHA512_ASM -DKECCAK1600_ASM -DRC4_ASM -DMD5_ASM -DAESNI_ASM -DVPAES_ASM -DGHASH_ASM -DECP_NISTZ256_ASM -DX25519_ASM -DPOLY1305_ASM -DNDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 The 'numbers' are in 1000s of bytes per second processed. type 16 bytes 64 bytes 256 bytes 1024 bytes 8192 bytes 16384 bytes aes-128-cbc 74164.26k 140205.23k 192356.95k 212688.55k 218611.71k 219436.37k root at officelink01:~#...

Hi Francois, Thanks for your quick response. Actually, I had already done that... sudo apt-get install libpoppler-cpp-dev Reading package lists... Done Building dependency tree Reading state information... Done libpoppler-cpp-dev is already the newest version (0.41.0-0ubuntu1.1). 0 upgraded, 0 newly installed, 0 to remove and 107 not upgraded. Therefore, I assume I have this installed. Best

...ckages are compiled in C++14 mode by default. Here's what a g++ > | command for compiling one of Rcpp's modules look like on my system: > | > | g++ -I/usr/share/R/include -DNDEBUG -I../inst/include/ -fpic -g -O2 > | -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time > | -D_FORTIFY_SOURCE=2 -g -c barrier.cpp -o barrier.o > | > | According to GCC news [1], the default is now C++14 if no -std is given. > | R-admin suggests adapting the configuration for GCC 6 [2]. > | > | I'm using r-base-core in version 3.3.2-1xenial0 from the Ubuntu...

...g++-6 explicitly. You may be able to find out more about this issue at https://gcc.gnu.org/gcc-6/changes.html > sbuild (Debian sbuild) 0.67.0 (26 Dec 2015) on dl580gen9-02.hlinux ... > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -D_GNU_SOURCE -I../../include -I../../lvm -I../../part -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Werror -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -MT atomicio.lo -MD -MP -MF .deps/atomicio.Tpo -c atomicio.c -fPIC -DPIC -o .libs/atomicio.o > libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -D_GNU_SOURCE -I../../include -I../../lvm -I....

...o configure: CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" CPPFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2" LDFLAGS="-Wl,-z,relro -Wl,-z,now" /<<PKGBUILDDIR>>/./configure --build=x86_64-linux-gnu --prefix=/usr --includedir="\${prefix}/include" --mandir="\${prefix}/share/man" --infodir="\${prefix}/share/info" --sysconfdir=/...

...random' 'CFLAGS=-g -O2 -fdebug-prefix-map=/build/bind9-ISaUWy/bind9-9.10.6+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -fno-strict-aliasing -fno-delete-null-pointer-checks -DNO_VERSION_DATE -DDIG_SIGCHASE' 'LDFLAGS=-Wl,-z,relro -Wl,-z,now' 'CPPFLAGS=-Wdate-time -D_FORTIFY_SOURCE=2' Nov 23 10:12:12 debpdc named[16080]: loading configuration from '/etc/bind/named.conf' Nov 23 10:12:12 debpdc named[16080]: reading built-in trusted keys from file '/etc/bind/bind.keys' Nov 23 10:12:12 debpdc audit[16080]: AVC apparmor="DENIED&q...