Roger Bos
2019-May-28 19:58 UTC
[R] error when installing zoo package on macos: file 'DESCRIPTION' does not exist
I was able to upgrade to the latest version of the zoo package on my linux
machine, but my mac is given an error message that the DESCRIPTION does not
exist. I am sure that is not the real problem, but I don't know how to
debug or figure out what the real problem is. The output is below and my
sessionInfo() is as follows:
R version 3.6.0 (2019-04-26)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Mojave 10.14.5
Matrix products: default
BLAS:
/System/Library/Frameworks/Accelerate.framework/Versions/A/Frameworks/vecLib.framework/Versions/A/libBLAS.dylib
LAPACK:
/Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets tools methods
base
other attached packages:
[1] googledrive_0.1.3 alphavantager_0.1.1
loaded via a namespace (and not attached):
[1] Rcpp_1.0.1 rstudioapi_0.10 magrittr_1.5 usethis_1.5.0
devtools_2.0.2 tidyselect_0.2.5 pkgload_1.0.2
[8] R6_2.4.0 rlang_0.3.4 dplyr_0.8.1 pkgbuild_1.0.3
sessioninfo_1.1.1 cli_1.1.0 withr_2.1.2
[15] remotes_2.0.4 fortunes_1.5-4 rprojroot_1.3-2 assertthat_0.2.1
digest_0.6.18 tibble_2.1.1 crayon_1.3.4
[22] processx_3.3.1 purrr_0.3.2 callr_3.2.0 fs_1.3.1
ps_1.3.0 curl_3.3 testthat_2.1.1
[29] memoise_1.1.0 glue_1.3.1 compiler_3.6.0 pillar_1.4.0
backports_1.1.4 desc_1.2.0 prettyunits_1.0.2
[36] pkgconfig_2.0.2
install.packages("zoo")
There is a binary version available but the source version is later:
binary source needs_compilation
zoo 1.8-5 1.8-6 TRUE
Do you want to install from sources the package which needs compilation?
(Yes/no/cancel) yes
installing the source package ?zoo?
trying URL 'https://cran.rstudio.com/src/contrib/zoo_1.8-6.tar.gz'
Content type 'application/x-gzip' length 853504 bytes (833 KB)
=================================================downloaded 833 KB
* installing *source* package ?zoo? ...
** package ?zoo? successfully unpacked and MD5 sums checked
** using staged installation
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include -isysroot
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include
-fPIC -Wall -g -O2 -c coredata.c -o coredata.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include -isysroot
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include
-fPIC -Wall -g -O2 -c init.c -o init.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG
-I../inst/include -isysroot
/Library/Developer/CommandLineTools/SDKs/MacOSX.sdk -I/usr/local/include
-fPIC -Wall -g -O2 -c lag.c -o lag.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined
dynamic_lookup -single_module -multiply_defined suppress
-L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o zoo.so
coredata.o init.o lag.o -F/Library/Frameworks/R.framework/.. -framework R
-Wl,-framework -Wl,CoreFoundation
installing to
/Library/Frameworks/R.framework/Versions/3.6/Resources/library/00LOCK-zoo/00new/zoo/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
Error in tools:::.read_description(file) :
file 'DESCRIPTION' does not exist
Calls: suppressPackageStartupMessages ... withCallingHandlers ->
.getRequiredPackages -> <Anonymous> -> <Anonymous>
Execution halted
ERROR: lazy loading failed for package ?zoo?
* removing
?/Library/Frameworks/R.framework/Versions/3.6/Resources/library/zoo?
* restoring previous
?/Library/Frameworks/R.framework/Versions/3.6/Resources/library/zoo?
Warning in install.packages :
installation of package ?zoo? had non-zero exit status
The downloaded source packages are in
?/private/var/folders/pf/8_rzvpr95ybbr5n31grmh4dc0000gp/T/RtmpzRQrtQ/downloaded_packages?
[[alternative HTML version deleted]]