My apologies... here is the full code in summary
install.packages("ggplot2")
install.packages("ggplot2")
source("https://bioconductor.org/biocLite.R")
?BiocUpgrade
source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
source("https://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
source("https://bioconductor.org/bioLite.R")
biocLite("netReg")
help("Deprecated")
'BiocManager::install'
biocLite("netReg")
help("oldName-deprecated")
???oldName-deprecated?
.Deprecated(new, package=NULL, msg,
old = as.character(sys.call(sys.parent()))[1L])
Best,
Spencer
On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius at
comcast.net>
wrote:
>
> On 4/14/19 3:20 PM, Spencer Brackett wrote:
> > Good evening,
> >
> > I am having problems with downloading the package used to generate
> > regression models on R. The following is the error message I received.
I
> > tried installing BiocManager instead as suggested, but this too did
not
> > work. Any ideas?
> >
> > The downloaded binary packages are in
> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
> > installation path not writeable, unable to update packages: class,
> cluster,
> > codetools, foreign,
> > lattice, MASS, Matrix, mgcv, nlme, rpart, survival
> > Warning message:
> > 'biocLite' is deprecated.
> > Use 'BiocManager::install' instead.
> > See help("Deprecated")
>
>
> Since you did not include the code that provoked this message we can
> only guess that you did in fact use `bioLite`. We also cannot tell what
> you mean by "problems with downloading the package used to generate
> regression models on R". The typical first step is to use the glm or
lm
> function for this task and those are both in the stats package which is
> installed with the base version of R and is loaded by default when R is
> started up.
>
> "
>
> Have you tried following the suggestion at the end of the message?
>
>
> And do read the Posting Guide and include "commented, minimal,
> self-contained, reproducible code."
>
>
> --
>
> David.
>
> >
> > Best,
> >
> > Spencer
> >
> > [[alternative HTML version deleted]]
> >
> > ______________________________________________
> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> > https://stat.ethz.ch/mailman/listinfo/r-help
> > PLEASE do read the posting guide
> http://www.R-project.org/posting-guide.html
> > and provide commented, minimal, self-contained, reproducible code.
>
[[alternative HTML version deleted]]
Good evening,
I am having problems with downloading the package used to generate
regression models on R. The following is the error message I received. I
tried installing BiocManager instead as suggested, but this too did not
work. Any ideas?
The following is the full summary of what I?ve tried thus far...
install.packages("ggplot2")
install.packages("ggplot2")
source("https://bioconductor.org/biocLite.R")
?BiocUpgrade
source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
source("https://bioconductor.org/biocLite.R")
biocLite("BiocUpgrade")
source("https://bioconductor.org/bioLite.R")
biocLite("netReg")
help("Deprecated")
'BiocManager::install'
biocLite("netReg")
help("oldName-deprecated")
???oldName-deprecated?
.Deprecated(new, package=NULL, msg,
old = as.character(sys.call(sys.parent()))[1L])
Best,
Spencer
On Sun, Apr 14, 2019 at 7:58 PM Spencer Brackett <
spbrackett20 at saintjosephhs.com> wrote:
> My apologies... here is the full code in summary
>
> install.packages("ggplot2")
> install.packages("ggplot2")
> source("https://bioconductor.org/biocLite.R")
> ?BiocUpgrade
>
source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade")
> source("https://bioconductor.org/biocLite.R")
> biocLite("BiocUpgrade")
> source("https://bioconductor.org/bioLite.R")
> biocLite("netReg")
> help("Deprecated")
> 'BiocManager::install'
> biocLite("netReg")
> help("oldName-deprecated")
> ???oldName-deprecated?
> .Deprecated(new, package=NULL, msg,
> old = as.character(sys.call(sys.parent()))[1L])
>
> Best,
>
> Spencer
>
>
>
> On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius at
comcast.net>
> wrote:
>
>>
>> On 4/14/19 3:20 PM, Spencer Brackett wrote:
>> > Good evening,
>> >
>> > I am having problems with downloading the package used to
generate
>> > regression models on R. The following is the error message I
received. I
>> > tried installing BiocManager instead as suggested, but this too
did not
>> > work. Any ideas?
>> >
>> > The downloaded binary packages are in
>> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages
>> > installation path not writeable, unable to update packages: class,
>> cluster,
>> > codetools, foreign,
>> > lattice, MASS, Matrix, mgcv, nlme, rpart, survival
>> > Warning message:
>> > 'biocLite' is deprecated.
>> > Use 'BiocManager::install' instead.
>> > See help("Deprecated")
>>
>>
>> Since you did not include the code that provoked this message we can
>> only guess that you did in fact use `bioLite`. We also cannot tell what
>> you mean by "problems with downloading the package used to
generate
>> regression models on R". The typical first step is to use the glm
or lm
>> function for this task and those are both in the stats package which is
>> installed with the base version of R and is loaded by default when R is
>> started up.
>>
>> "
>>
>> Have you tried following the suggestion at the end of the message?
>>
>>
>> And do read the Posting Guide and include "commented, minimal,
>> self-contained, reproducible code."
>>
>>
>> --
>>
>> David.
>>
>> >
>> > Best,
>> >
>> > Spencer
>> >
>> > [[alternative HTML version deleted]]
>> >
>> > ______________________________________________
>> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
>> > https://stat.ethz.ch/mailman/listinfo/r-help
>> > PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> > and provide commented, minimal, self-contained, reproducible code.
>>
>
[[alternative HTML version deleted]]
netReg is not "the package that generates regression models in R." Tons of packages generate regression models in R, including lm(), which is in the stats package that is part of R's standard distro. So what exactly is it that you want to do that you think requires netReg? And if netReg is required, have you tried addressing your queries to the Bioconductor list, as it is one of their packages? Cheers, Bert "The trouble with having an open mind is that people keep coming along and sticking things into it." -- Opus (aka Berkeley Breathed in his "Bloom County" comic strip ) On Sun, Apr 21, 2019 at 5:06 PM Spencer Brackett < spbrackett20 at saintjosephhs.com> wrote:> Good evening, > > I am having problems with downloading the package used to generate > regression models on R. The following is the error message I received. I > tried installing BiocManager instead as suggested, but this too did not > work. Any ideas? > > The following is the full summary of what I?ve tried thus far... > > install.packages("ggplot2") > install.packages("ggplot2") > source("https://bioconductor.org/biocLite.R") > ?BiocUpgrade > source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade") > source("https://bioconductor.org/biocLite.R") > biocLite("BiocUpgrade") > source("https://bioconductor.org/bioLite.R") > biocLite("netReg") > help("Deprecated") > 'BiocManager::install' > biocLite("netReg") > help("oldName-deprecated") > ???oldName-deprecated? > .Deprecated(new, package=NULL, msg, > old = as.character(sys.call(sys.parent()))[1L]) > > Best, > > Spencer > > On Sun, Apr 14, 2019 at 7:58 PM Spencer Brackett < > spbrackett20 at saintjosephhs.com> wrote: > > > My apologies... here is the full code in summary > > > > install.packages("ggplot2") > > install.packages("ggplot2") > > source("https://bioconductor.org/biocLite.R") > > ?BiocUpgrade > > source("https://bioconductor.org/biocLite.R")biocLite("BiocUpgrade") > > source("https://bioconductor.org/biocLite.R") > > biocLite("BiocUpgrade") > > source("https://bioconductor.org/bioLite.R") > > biocLite("netReg") > > help("Deprecated") > > 'BiocManager::install' > > biocLite("netReg") > > help("oldName-deprecated") > > ???oldName-deprecated? > > .Deprecated(new, package=NULL, msg, > > old = as.character(sys.call(sys.parent()))[1L]) > > > > Best, > > > > Spencer > > > > > > > > On Sun, Apr 14, 2019 at 7:20 PM David Winsemius <dwinsemius at comcast.net> > > wrote: > > > >> > >> On 4/14/19 3:20 PM, Spencer Brackett wrote: > >> > Good evening, > >> > > >> > I am having problems with downloading the package used to generate > >> > regression models on R. The following is the error message I > received. I > >> > tried installing BiocManager instead as suggested, but this too did > not > >> > work. Any ideas? > >> > > >> > The downloaded binary packages are in > >> > C:\Users\Spencer\AppData\Local\Temp\Rtmp8YKVqx\downloaded_packages > >> > installation path not writeable, unable to update packages: class, > >> cluster, > >> > codetools, foreign, > >> > lattice, MASS, Matrix, mgcv, nlme, rpart, survival > >> > Warning message: > >> > 'biocLite' is deprecated. > >> > Use 'BiocManager::install' instead. > >> > See help("Deprecated") > >> > >> > >> Since you did not include the code that provoked this message we can > >> only guess that you did in fact use `bioLite`. We also cannot tell what > >> you mean by "problems with downloading the package used to generate > >> regression models on R". The typical first step is to use the glm or lm > >> function for this task and those are both in the stats package which is > >> installed with the base version of R and is loaded by default when R is > >> started up. > >> > >> " > >> > >> Have you tried following the suggestion at the end of the message? > >> > >> > >> And do read the Posting Guide and include "commented, minimal, > >> self-contained, reproducible code." > >> > >> > >> -- > >> > >> David. > >> > >> > > >> > Best, > >> > > >> > Spencer > >> > > >> > [[alternative HTML version deleted]] > >> > > >> > ______________________________________________ > >> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > >> > https://stat.ethz.ch/mailman/listinfo/r-help > >> > PLEASE do read the posting guide > >> http://www.R-project.org/posting-guide.html > >> > and provide commented, minimal, self-contained, reproducible code. > >> > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide > http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >[[alternative HTML version deleted]]