peter dalgaard
2018-Feb-02 09:25 UTC
[R] Updating Rcpp package when it is claimed by dplyr
Or, to avoid accusing you of lying. what you think is "vanilla"
probably isn't. What exactly did you do? On Unix-likes, I would do something
like this
echo
'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")'
| R --vanilla
(or maybe https://cloud.r-project.org is better...)
-pd
> On 2 Feb 2018, at 08:15 , Jeff Newmiller <jdnewmil at
dcn.davis.CA.us> wrote:
>
> Your last statement is extremely unlikely to be true. The dplyr package
should not be present in a vanilla environment, so there should be no such
conflict.
> --
> Sent from my phone. Please excuse my brevity.
>
> On February 1, 2018 11:00:01 PM PST, Patrick Connolly <p_connolly at
slingshot.co.nz> wrote:
>> When i tried to install the hunspell package, I got this error
>> message:
>>
>> Error: package ?Rcpp? 0.12.3 was found, but >= 0.12.12 is required
by
>> ?hunspell?
>>
>> So I set about installing a new version of Rcpp but I get this message:
>>
>> Error in unloadNamespace(pkg_name) :
>> namespace ?Rcpp? is imported by ?dplyr? so cannot be unloaded
>>
>> How does one get around that? I tried installing Rcpp in a vanilla
>> session but the result was the same.
>>
>> TIA
>> Patrick
>>
>>
>>> sessionInfo()
>> R version 3.4.3 (2017-11-30)
>> Platform: x86_64-pc-linux-gnu (64-bit)
>> Running under: Ubuntu 14.04.5 LTS
>>
>> Matrix products: default
>> BLAS: /home/pat/local/R-3.4.3/lib/libRblas.so
>> LAPACK: /home/pat/local/R-3.4.3/lib/libRlapack.so
>>
>> locale:
>> [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
>> [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
>> [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
>> [7] LC_PAPER=en_NZ.UTF-8 LC_NAME=C
>> [9] LC_ADDRESS=C LC_TELEPHONE=C
>> [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
>>
>> attached base packages:
>> [1] utils stats grDevices graphics methods base
>>
>> other attached packages:
>> [1] lattice_0.20-35
>>
>> loaded via a namespace (and not attached):
>> [1] compiler_3.4.3 magrittr_1.5 R6_2.1.2 assertthat_0.1
>> parallel_3.4.3
>> [6] tools_3.4.3 DBI_0.3.1 dplyr_0.4.3 Rcpp_0.12.3
>> grid_3.4.3
>>
>>
>> --
>>
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>>
>> ___ Patrick Connolly
>> {~._.~} Great minds discuss ideas
>> _( Y )_ Average minds discuss events
>> (:_~*~_:) Small minds discuss people
>> (_)-(_) ..... Eleanor Roosevelt
>>
>>
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
>>
>> ______________________________________________
>> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
>> https://stat.ethz.ch/mailman/listinfo/r-help
>> PLEASE do read the posting guide
>> http://www.R-project.org/posting-guide.html
>> and provide commented, minimal, self-contained, reproducible code.
>
> ______________________________________________
> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
--
Peter Dalgaard, Professor,
Center for Statistics, Copenhagen Business School
Solbjerg Plads 3, 2000 Frederiksberg, Denmark
Phone: (+45)38153501
Office: A 4.23
Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com
Patrick Connolly
2018-Feb-02 21:35 UTC
[R] Updating Rcpp package when it is claimed by dplyr
On Fri, 02-Feb-2018 at 10:25AM +0100, peter dalgaard wrote:
|> Or, to avoid accusing you of lying. what you think is "vanilla"
|> probably isn't. What exactly did you do? On Unix-likes, I would do
|> something like this
|> echo
'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")'
| R --vanilla
|>
|> (or maybe https://cloud.r-project.org is better...)
Thanks for the suggestion.
I simply did
R -- vanilla
I tried it again this morning so that I could compare the output.
However, it *worked* fine -- just as I thought it would done
yesterday. Why it didn't work yesterday is a mystery.
I've had a few other things behaving strangely on this machine so
there might be an OS issue, not an R issue.
Thanks for taking the time.
Patrick
|>
|> -pd
|>
|>
|>
|> > On 2 Feb 2018, at 08:15 , Jeff Newmiller <jdnewmil at
dcn.davis.CA.us> wrote:
|> >
|> > Your last statement is extremely unlikely to be true. The dplyr
package should not be present in a vanilla environment, so there should be no
such conflict.
|> > --
|> > Sent from my phone. Please excuse my brevity.
|> >
|> > On February 1, 2018 11:00:01 PM PST, Patrick Connolly <p_connolly
at slingshot.co.nz> wrote:
|> >> When i tried to install the hunspell package, I got this error
|> >> message:
|> >>
|> >> Error: package ?Rcpp? 0.12.3 was found, but >= 0.12.12 is
required by
|> >> ?hunspell?
|> >>
|> >> So I set about installing a new version of Rcpp but I get this
message:
|> >>
|> >> Error in unloadNamespace(pkg_name) :
|> >> namespace ?Rcpp? is imported by ?dplyr? so cannot be unloaded
|> >>
|> >> How does one get around that? I tried installing Rcpp in a
vanilla
|> >> session but the result was the same.
|> >>
|> >> TIA
|> >> Patrick
|> >>
|> >>
|> >>> sessionInfo()
|> >> R version 3.4.3 (2017-11-30)
|> >> Platform: x86_64-pc-linux-gnu (64-bit)
|> >> Running under: Ubuntu 14.04.5 LTS
|> >>
|> >> Matrix products: default
|> >> BLAS: /home/pat/local/R-3.4.3/lib/libRblas.so
|> >> LAPACK: /home/pat/local/R-3.4.3/lib/libRlapack.so
|> >>
|> >> locale:
|> >> [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
|> >> [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
|> >> [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
|> >> [7] LC_PAPER=en_NZ.UTF-8 LC_NAME=C
|> >> [9] LC_ADDRESS=C LC_TELEPHONE=C
|> >> [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
|> >>
|> >> attached base packages:
|> >> [1] utils stats grDevices graphics methods base
|> >>
|> >> other attached packages:
|> >> [1] lattice_0.20-35
|> >>
|> >> loaded via a namespace (and not attached):
|> >> [1] compiler_3.4.3 magrittr_1.5 R6_2.1.2 assertthat_0.1
|> >> parallel_3.4.3
|> >> [6] tools_3.4.3 DBI_0.3.1 dplyr_0.4.3 Rcpp_0.12.3
|> >> grid_3.4.3
|> >>
|> >>
|> >> --
|> >>
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
|> >>
|> >> ___ Patrick Connolly
|> >> {~._.~} Great minds discuss ideas
|> >> _( Y )_ Average minds discuss events
|> >> (:_~*~_:) Small minds discuss people
|> >> (_)-(_) ..... Eleanor Roosevelt
|> >>
|> >>
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
|> >>
|> >> ______________________________________________
|> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more,
see
|> >> https://stat.ethz.ch/mailman/listinfo/r-help
|> >> PLEASE do read the posting guide
|> >> http://www.R-project.org/posting-guide.html
|> >> and provide commented, minimal, self-contained, reproducible
code.
|> >
|> > ______________________________________________
|> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see
|> > https://stat.ethz.ch/mailman/listinfo/r-help
|> > PLEASE do read the posting guide
http://www.R-project.org/posting-guide.html
|> > and provide commented, minimal, self-contained, reproducible code.
|>
|> --
|> Peter Dalgaard, Professor,
|> Center for Statistics, Copenhagen Business School
|> Solbjerg Plads 3, 2000 Frederiksberg, Denmark
|> Phone: (+45)38153501
|> Office: A 4.23
|> Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com
|>
|>
|>
|>
|>
|>
|>
|>
|>
--
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
___ Patrick Connolly
{~._.~} Great minds discuss ideas
_( Y )_ Average minds discuss events
(:_~*~_:) Small minds discuss people
(_)-(_) ..... Eleanor Roosevelt
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
Jeff Newmiller
2018-Feb-02 22:51 UTC
[R] Updating Rcpp package when it is claimed by dplyr
Be sure to not put a space between the "---" and the "vanilla". -- Sent from my phone. Please excuse my brevity. On February 2, 2018 1:35:07 PM PST, Patrick Connolly <p_connolly at slingshot.co.nz> wrote:>On Fri, 02-Feb-2018 at 10:25AM +0100, peter dalgaard wrote: > >|> Or, to avoid accusing you of lying. what you think is "vanilla" >|> probably isn't. What exactly did you do? On Unix-likes, I would do >|> something like this > >|> echo >'options(repos=list(CRAN="cran.r-project.org"));install.packages("Rcpp")' >| R --vanilla >|> >|> (or maybe https://cloud.r-project.org is better...) > >Thanks for the suggestion. > >I simply did >R -- vanilla > >I tried it again this morning so that I could compare the output. >However, it *worked* fine -- just as I thought it would done >yesterday. Why it didn't work yesterday is a mystery. > >I've had a few other things behaving strangely on this machine so >there might be an OS issue, not an R issue. > >Thanks for taking the time. > >Patrick > >|> >|> -pd >|> >|> >|> >|> > On 2 Feb 2018, at 08:15 , Jeff Newmiller ><jdnewmil at dcn.davis.CA.us> wrote: >|> > >|> > Your last statement is extremely unlikely to be true. The dplyr >package should not be present in a vanilla environment, so there should >be no such conflict. >|> > -- >|> > Sent from my phone. Please excuse my brevity. >|> > >|> > On February 1, 2018 11:00:01 PM PST, Patrick Connolly ><p_connolly at slingshot.co.nz> wrote: >|> >> When i tried to install the hunspell package, I got this error >|> >> message: >|> >> >|> >> Error: package ?Rcpp? 0.12.3 was found, but >= 0.12.12 is >required by >|> >> ?hunspell? >|> >> >|> >> So I set about installing a new version of Rcpp but I get this >message: >|> >> >|> >> Error in unloadNamespace(pkg_name) : >|> >> namespace ?Rcpp? is imported by ?dplyr? so cannot be unloaded >|> >> >|> >> How does one get around that? I tried installing Rcpp in a >vanilla >|> >> session but the result was the same. >|> >> >|> >> TIA >|> >> Patrick >|> >> >|> >> >|> >>> sessionInfo() >|> >> R version 3.4.3 (2017-11-30) >|> >> Platform: x86_64-pc-linux-gnu (64-bit) >|> >> Running under: Ubuntu 14.04.5 LTS >|> >> >|> >> Matrix products: default >|> >> BLAS: /home/pat/local/R-3.4.3/lib/libRblas.so >|> >> LAPACK: /home/pat/local/R-3.4.3/lib/libRlapack.so >|> >> >|> >> locale: >|> >> [1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C >|> >> [3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8 >|> >> [5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8 >|> >> [7] LC_PAPER=en_NZ.UTF-8 LC_NAME=C >|> >> [9] LC_ADDRESS=C LC_TELEPHONE=C >|> >> [11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C >|> >> >|> >> attached base packages: >|> >> [1] utils stats grDevices graphics methods base >|> >> >|> >> other attached packages: >|> >> [1] lattice_0.20-35 >|> >> >|> >> loaded via a namespace (and not attached): >|> >> [1] compiler_3.4.3 magrittr_1.5 R6_2.1.2 assertthat_0.1 >|> >> parallel_3.4.3 >|> >> [6] tools_3.4.3 DBI_0.3.1 dplyr_0.4.3 Rcpp_0.12.3 >|> >> grid_3.4.3 >|> >> >|> >> >|> >> -- >|> >> >~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~. >|> >> >|> >> ___ Patrick Connolly >|> >> {~._.~} Great minds discuss ideas >|> >> _( Y )_ Average minds discuss events >|> >> (:_~*~_:) Small minds discuss people >|> >> (_)-(_) ..... Eleanor Roosevelt >|> >> >|> >> >~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~. >|> >> >|> >> ______________________________________________ >|> >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >|> >> https://stat.ethz.ch/mailman/listinfo/r-help >|> >> PLEASE do read the posting guide >|> >> http://www.R-project.org/posting-guide.html >|> >> and provide commented, minimal, self-contained, reproducible >code. >|> > >|> > ______________________________________________ >|> > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >|> > https://stat.ethz.ch/mailman/listinfo/r-help >|> > PLEASE do read the posting guide >http://www.R-project.org/posting-guide.html >|> > and provide commented, minimal, self-contained, reproducible code. >|> >|> -- >|> Peter Dalgaard, Professor, >|> Center for Statistics, Copenhagen Business School >|> Solbjerg Plads 3, 2000 Frederiksberg, Denmark >|> Phone: (+45)38153501 >|> Office: A 4.23 >|> Email: pd.mes at cbs.dk Priv: PDalgd at gmail.com >|> >|> >|> >|> >|> >|> >|> >|> >|>
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