Pijush Das
2017-Dec-29 07:29 UTC
[R] Facing problem in installing the package named "methyAnalysis"
Dear Sir, I have been using R for a long time. But recently I have faced a problem when installing the Bioconductor package named "methyAnalysis". Firstly it was require to update my older R (R version 3.4.3 (2017-11-30)) in to newer version. That time I have also updated the RStudio software. After that when I have tried to install the package named "methyAnalysis". It shows some error given below. No methods found in package ?IRanges? for requests: ?%in%?, ?elementLengths?, ?elementMetadata?, ?ifelse?, ?queryHits?, ?Rle?, ?subjectHits?, ?t? when loading ?bumphunter? Error: package or namespace load failed for ?methyAnalysis?: objects ?.__T__split:base?, ?split? are not exported by 'namespace:IRanges' In addition: Warning message: replacing previous import ?BiocGenerics::image? by ?graphics::image? when loading ?methylumi? I also try to install the package after downloading the source package from Bioconductor but the method is useless. Please help me to install the package named "methyAnalysis". Thanking you regards Pijush [[alternative HTML version deleted]]
Michael Dewey
2017-Dec-29 11:50 UTC
[R] Facing problem in installing the package named "methyAnalysis"
Dear Pijush You might do better to ask on the Bioconductor list as IRanges does not seem to be on CRAN so I deduce it is a Bioconductor package too. Michael On 29/12/2017 07:29, Pijush Das wrote:> Dear Sir, > > > > > I have been using R for a long time. But recently I have faced a problem > when installing the Bioconductor package named "methyAnalysis". Firstly it > was require to update my older R (R version 3.4.3 (2017-11-30)) in to newer > version. That time I have also updated the RStudio software. > > After that when I have tried to install the package named "methyAnalysis". > It shows some error given below. > > No methods found in package ?IRanges? for requests: ?%in%?, > ?elementLengths?, ?elementMetadata?, ?ifelse?, ?queryHits?, ?Rle?, > ?subjectHits?, ?t? when loading ?bumphunter? > Error: package or namespace load failed for ?methyAnalysis?: > objects ?.__T__split:base?, ?split? are not exported by 'namespace:IRanges' > In addition: Warning message: > replacing previous import ?BiocGenerics::image? by ?graphics::image? when > loading ?methylumi? > > I also try to install the package after downloading the source package from > Bioconductor but the method is useless. > > Please help me to install the package named "methyAnalysis". > > Thanking you > > > > regards > Pijush > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code. >-- Michael http://www.dewey.myzen.co.uk/home.html
Pijush Das
2017-Dec-29 12:00 UTC
[R] Facing problem in installing the package named "methyAnalysis"
Thank you Michael Dewey. Can you please send me the email id for Bioconductor. regards Pijush On Fri, Dec 29, 2017 at 5:20 PM, Michael Dewey <lists at dewey.myzen.co.uk> wrote:> Dear Pijush > > You might do better to ask on the Bioconductor list as IRanges does not > seem to be on CRAN so I deduce it is a Bioconductor package too. > > Michael > > > On 29/12/2017 07:29, Pijush Das wrote: > >> Dear Sir, >> >> >> >> >> I have been using R for a long time. But recently I have faced a problem >> when installing the Bioconductor package named "methyAnalysis". Firstly it >> was require to update my older R (R version 3.4.3 (2017-11-30)) in to >> newer >> version. That time I have also updated the RStudio software. >> >> After that when I have tried to install the package named "methyAnalysis". >> It shows some error given below. >> >> No methods found in package ?IRanges? for requests: ?%in%?, >> ?elementLengths?, ?elementMetadata?, ?ifelse?, ?queryHits?, ?Rle?, >> ?subjectHits?, ?t? when loading ?bumphunter? >> Error: package or namespace load failed for ?methyAnalysis?: >> objects ?.__T__split:base?, ?split? are not exported by >> 'namespace:IRanges' >> In addition: Warning message: >> replacing previous import ?BiocGenerics::image? by ?graphics::image? when >> loading ?methylumi? >> >> I also try to install the package after downloading the source package >> from >> Bioconductor but the method is useless. >> >> Please help me to install the package named "methyAnalysis". >> >> Thanking you >> >> >> >> regards >> Pijush >> >> [[alternative HTML version deleted]] >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide http://www.R-project.org/posti >> ng-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> >> > -- > Michael > http://www.dewey.myzen.co.uk/home.html >[[alternative HTML version deleted]]