Hello,
Please keep this on the list, always cc r-help.
One of the files in your attachment is empty:
y <- read.csv(file.choose("GT.csv"))
Error in read.table(file = file, header = header, sep = sep, quote = quote,? :
? no lines available in input
Rui Barradas
?
Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>:
> Thank you so much for your input.
>
> I am relatively new to R and I don't understand this "read.csv
> returns data.frames". Sorry.
>
> This however did not work. "unlist(x) and unlist(y)". I got a
series
> of 43 warnings:
>
> Warning messages:
> 1: In doTryCatch(return(expr), name, parentenv, handler) :
> ? "method" is not a graphical parameter
> 2: In doTryCatch(return(expr), name, parentenv, handler) :
> ? "method" is not a graphical parameter
> .
> .
> .
> .
> .
>
> ? "method" is not a graphical parameter
> 42: In doTryCatch(return(expr), name, parentenv, handler) :
> ? "method" is not a graphical parameter
> 43: In cbind(x, y) :
> ? number of rows of result is not a multiple of vector length (arg 2)
> ?
> Would it help if I send the two csv files to you? I'd really
> appreciate your help.
>
> Thanking you
> ?
>
> -------------------------
> FROM: ruipbarradas at sapo.pt <ruipbarradas at sapo.pt>
> SENT: Wednesday, September 20, 2017 5:21:04 PM
> TO: Chaitanya Ganne
> SUBJECT: Re: rcorr error in R stat
>
> Hello,
>
> Maybe I'm completely off, but read.csv returns data.frames, which
> are lists with a dim attribute.
> Instead of as.vector try unlist(x) and unlist(y).
>
> Note that if 'df' is a data.frame, class(as.vector(df)) returns
"data.frame".
>
> Hope this helps,
>
> Rui Barradas
> ?
>
> Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>:
>
>> Good afternoon,?
>>
>> I have two variables x and y. I am trying to run a correlation
>> between them as vectors.?
>> x <- read.csv(file.choose(NPA.csv))
>> y <- read.csv(file.choose(GT.csv))
>> res <- cor(as.vector(x), as.vector(y))
>> round(res, 2)
>> install.packages("Hmisc")
>> library(Hmisc)
>> res2 <- rcorr(as.vector(x), as.vector(y))
>> res2 <- rcorr(as.vector(x), as.vector(y))
>> Error in storage.mode(x) <- "double" :?
>> ?(list) object cannot be coerced to type 'double'
>> ?
>> ---------------------------------------------------
>>
>> In fact I find this is something to do with the way the matrices
>> are being considered for rcorr to be different from the way the
>> matrices are being considered for 'cor'. The cor function gave
me
>> this output as mentioned below. However I am using the rcorr
>> function to build the correlplots later on.
>> ? ? ? ? ? ?
>>
>>
>> BC_11L_parstriangularis_1 BC_12L_rostralmiddlefrontal_2
>> BC_20L_fusiform_4 BC_21L_inferiortemporal_3
>> BC_23L_middletemporal_1 vw_12L_rostralmiddlefrontal_2
>> vw_19L_inferiorparietal_1
>> CVLT_T4 -0.23 0.13 -0.01 -0.24 -0.14 0.02 0.06
>> CVLT_T5 -0.28 0.12 0.04 -0.25 -0.19 0.15 0.11
>> CVLT_Total -0.25 0.07 0.13 -0.25 -0.22 0.05 -0.05
>> CVLT_LDF -0.16 0.04 0.16 -0.23 -0.32 0.16 0.01
>> CVLT_RoF -0.12 0.02 0.06 -0.04 -0.14 0.16 -0.06
>> CVLT_TDR -0.11 0.1 0.13 -0.24 -0.25 0.25 -0.06
>> LM_I -0.46 -0.19 -0.11 -0.06 -0.24 -0.01 0.1
>> LM_II -0.35 0.06 0.05 -0.11 -0.31 0.22 0.05
>> p_REC -0.12 -0.27 0.36 -0.19 -0.09 -0.17 -0.21
>> TF -0.01 -0.01 -0.21 -0.2 -0.27 -0.07 0.06
>>
>> ?
>> Please help.
>>
>> /DR. GANNE CHAITANYA MD, PHD/
>>
>> /PDF?//NEUROLOGY/
>>
>> /TJU,?//PHILADELPHIA, 19107, PA/
>>
>>
>> The information contained in this transmission contains
>> privileged and confidential information. It is intended only for
>> the use of the person named above. If you are not the intended
>> recipient, you are hereby notified that any review, dissemination,
>> distribution or duplication of this communication is strictly
>> prohibited. If you are not the intended recipient, please contact
>> the sender by reply email and destroy all copies of the original
>> message.
>>
>> _CAUTION_: Intended recipients should NOT use email communication
>> for emergent or urgent health care matters.
>
> ?
?
[[alternative HTML version deleted]]
Hello, Also, the other file, NPA.csv, is not in tabular form. Can you please reformat it? Rui Barradas Citando ruipbarradas at sapo.pt:> Hello, > > Please keep this on the list, always cc r-help. > One of the files in your attachment is empty: > > y <- read.csv(file.choose("GT.csv")) > Error in read.table(file = file, header = header, sep = sep, quote = > quote,? : > ? no lines available in input > > Rui Barradas > ? > > Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>: > >> Thank you so much for your input. >> >> I am relatively new to R and I don't understand this "read.csv >> returns data.frames". Sorry. >> >> This however did not work. "unlist(x) and unlist(y)". I got a series >> of 43 warnings: >> >> Warning messages: >> 1: In doTryCatch(return(expr), name, parentenv, handler) : >> ? "method" is not a graphical parameter >> 2: In doTryCatch(return(expr), name, parentenv, handler) : >> ? "method" is not a graphical parameter >> . >> . >> . >> . >> . >> >> ? "method" is not a graphical parameter >> 42: In doTryCatch(return(expr), name, parentenv, handler) : >> ? "method" is not a graphical parameter >> 43: In cbind(x, y) : >> ? number of rows of result is not a multiple of vector length (arg 2) >> ? >> Would it help if I send the two csv files to you? I'd really >> appreciate your help. >> >> Thanking you >> ? >> >> ------------------------- >> FROM: ruipbarradas at sapo.pt <ruipbarradas at sapo.pt> >> SENT: Wednesday, September 20, 2017 5:21:04 PM >> TO: Chaitanya Ganne >> SUBJECT: Re: rcorr error in R stat >> >> Hello, >> >> Maybe I'm completely off, but read.csv returns data.frames, which >> are lists with a dim attribute. >> Instead of as.vector try unlist(x) and unlist(y). >> >> Note that if 'df' is a data.frame, class(as.vector(df)) returns >> "data.frame". >> >> Hope this helps, >> >> Rui Barradas >> ? >> >> Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>: >> >>> Good afternoon,? >>> >>> I have two variables x and y. I am trying to run a correlation >>> between them as vectors.? >>> x <- read.csv(file.choose(NPA.csv)) >>> y <- read.csv(file.choose(GT.csv)) >>> res <- cor(as.vector(x), as.vector(y)) >>> round(res, 2) >>> install.packages("Hmisc") >>> library(Hmisc) >>> res2 <- rcorr(as.vector(x), as.vector(y)) >>> res2 <- rcorr(as.vector(x), as.vector(y)) >>> Error in storage.mode(x) <- "double" :? >>> ?(list) object cannot be coerced to type 'double' >>> ? >>> --------------------------------------------------- >>> >>> In fact I find this is something to do with the way the matrices >>> are being considered for rcorr to be different from the way the >>> matrices are being considered for 'cor'. The cor function gave me >>> this output as mentioned below. However I am using the rcorr >>> function to build the correlplots later on. >>> ? ? ? ? ? ? >>> >>> >>> BC_11L_parstriangularis_1 BC_12L_rostralmiddlefrontal_2 >>> BC_20L_fusiform_4 BC_21L_inferiortemporal_3 >>> BC_23L_middletemporal_1 vw_12L_rostralmiddlefrontal_2 >>> vw_19L_inferiorparietal_1 >>> CVLT_T4 -0.23 0.13 -0.01 -0.24 -0.14 0.02 0.06 >>> CVLT_T5 -0.28 0.12 0.04 -0.25 -0.19 0.15 0.11 >>> CVLT_Total -0.25 0.07 0.13 -0.25 -0.22 0.05 -0.05 >>> CVLT_LDF -0.16 0.04 0.16 -0.23 -0.32 0.16 0.01 >>> CVLT_RoF -0.12 0.02 0.06 -0.04 -0.14 0.16 -0.06 >>> CVLT_TDR -0.11 0.1 0.13 -0.24 -0.25 0.25 -0.06 >>> LM_I -0.46 -0.19 -0.11 -0.06 -0.24 -0.01 0.1 >>> LM_II -0.35 0.06 0.05 -0.11 -0.31 0.22 0.05 >>> p_REC -0.12 -0.27 0.36 -0.19 -0.09 -0.17 -0.21 >>> TF -0.01 -0.01 -0.21 -0.2 -0.27 -0.07 0.06 >>> >>> ? >>> Please help. >>> >>> /DR. GANNE CHAITANYA MD, PHD/ >>> >>> /PDF?//NEUROLOGY/ >>> >>> /TJU,?//PHILADELPHIA, 19107, PA/ >>> >>> >>> The information contained in this transmission contains >>> privileged and confidential information. It is intended only for >>> the use of the person named above. If you are not the intended >>> recipient, you are hereby notified that any review, dissemination, >>> distribution or duplication of this communication is strictly >>> prohibited. If you are not the intended recipient, please contact >>> the sender by reply email and destroy all copies of the original >>> message. >>> >>> _CAUTION_: Intended recipients should NOT use email communication >>> for emergent or urgent health care matters. >> >> ? > > ? > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://stat.ethz.ch/mailman/listinfo/r-help > PLEASE do read the posting guide http://www.R-project.org/posting-guide.html > and provide commented, minimal, self-contained, reproducible code.
My apologies for the late reply. I had scans after I last messaged you yesterday. Please find attached the ms-dos CSV file which I prepared using microsoft excel. there should be GT1.csv and NPA1.csv. Thanking you ________________________________ From: ruipbarradas at sapo.pt <ruipbarradas at sapo.pt> Sent: Thursday, September 21, 2017 1:21:22 PM To: Chaitanya Ganne; r-help Subject: Re: [R] rcorr error in R stat Hello, Also, the other file, NPA.csv, is not in tabular form. Can you please reformat it? Rui Barradas Citando ruipbarradas at sapo.pt:> Hello, > > Please keep this on the list, always cc r-help. > One of the files in your attachment is empty: > > y <- read.csv(file.choose("GT.csv")) > Error in read.table(file = file, header = header, sep = sep, quote > quote, : > no lines available in input > > Rui Barradas > > > Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>: > >> Thank you so much for your input. >> >> I am relatively new to R and I don't understand this "read.csv >> returns data.frames". Sorry. >> >> This however did not work. "unlist(x) and unlist(y)". I got a series >> of 43 warnings: >> >> Warning messages: >> 1: In doTryCatch(return(expr), name, parentenv, handler) : >> "method" is not a graphical parameter >> 2: In doTryCatch(return(expr), name, parentenv, handler) : >> "method" is not a graphical parameter >> . >> . >> . >> . >> . >> >> "method" is not a graphical parameter >> 42: In doTryCatch(return(expr), name, parentenv, handler) : >> "method" is not a graphical parameter >> 43: In cbind(x, y) : >> number of rows of result is not a multiple of vector length (arg 2) >> >> Would it help if I send the two csv files to you? I'd really >> appreciate your help. >> >> Thanking you >> >> >> ------------------------- >> FROM: ruipbarradas at sapo.pt <ruipbarradas at sapo.pt> >> SENT: Wednesday, September 20, 2017 5:21:04 PM >> TO: Chaitanya Ganne >> SUBJECT: Re: rcorr error in R stat >> >> Hello, >> >> Maybe I'm completely off, but read.csv returns data.frames, which >> are lists with a dim attribute. >> Instead of as.vector try unlist(x) and unlist(y). >> >> Note that if 'df' is a data.frame, class(as.vector(df)) returns >> "data.frame". >> >> Hope this helps, >> >> Rui Barradas >> >> >> Citando Chaitanya Ganne <Chaitanya.Ganne at jefferson.edu>: >> >>> Good afternoon, >>> >>> I have two variables x and y. I am trying to run a correlation >>> between them as vectors. >>> x <- read.csv(file.choose(NPA.csv)) >>> y <- read.csv(file.choose(GT.csv)) >>> res <- cor(as.vector(x), as.vector(y)) >>> round(res, 2) >>> install.packages("Hmisc") >>> library(Hmisc) >>> res2 <- rcorr(as.vector(x), as.vector(y)) >>> res2 <- rcorr(as.vector(x), as.vector(y)) >>> Error in storage.mode(x) <- "double" : >>> (list) object cannot be coerced to type 'double' >>> >>> --------------------------------------------------- >>> >>> In fact I find this is something to do with the way the matrices >>> are being considered for rcorr to be different from the way the >>> matrices are being considered for 'cor'. The cor function gave me >>> this output as mentioned below. However I am using the rcorr >>> function to build the correlplots later on. >>> >>> >>> >>> BC_11L_parstriangularis_1 BC_12L_rostralmiddlefrontal_2 >>> BC_20L_fusiform_4 BC_21L_inferiortemporal_3 >>> BC_23L_middletemporal_1 vw_12L_rostralmiddlefrontal_2 >>> vw_19L_inferiorparietal_1 >>> CVLT_T4 -0.23 0.13 -0.01 -0.24 -0.14 0.02 0.06 >>> CVLT_T5 -0.28 0.12 0.04 -0.25 -0.19 0.15 0.11 >>> CVLT_Total -0.25 0.07 0.13 -0.25 -0.22 0.05 -0.05 >>> CVLT_LDF -0.16 0.04 0.16 -0.23 -0.32 0.16 0.01 >>> CVLT_RoF -0.12 0.02 0.06 -0.04 -0.14 0.16 -0.06 >>> CVLT_TDR -0.11 0.1 0.13 -0.24 -0.25 0.25 -0.06 >>> LM_I -0.46 -0.19 -0.11 -0.06 -0.24 -0.01 0.1 >>> LM_II -0.35 0.06 0.05 -0.11 -0.31 0.22 0.05 >>> p_REC -0.12 -0.27 0.36 -0.19 -0.09 -0.17 -0.21 >>> TF -0.01 -0.01 -0.21 -0.2 -0.27 -0.07 0.06 >>> >>> >>> Please help. >>> >>> /DR. GANNE CHAITANYA MD, PHD/ >>> >>> /PDF //NEUROLOGY/ >>> >>> /TJU, //PHILADELPHIA, 19107, PA/ >>> >>> >>> The information contained in this transmission contains >>> privileged and confidential information. It is intended only for >>> the use of the person named above. If you are not the intended >>> recipient, you are hereby notified that any review, dissemination, >>> distribution or duplication of this communication is strictly >>> prohibited. If you are not the intended recipient, please contact >>> the sender by reply email and destroy all copies of the original >>> message. >>> >>> _CAUTION_: Intended recipients should NOT use email communication >>> for emergent or urgent health care matters. >> >> > > > > [[alternative HTML version deleted]] > > ______________________________________________ > R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see > https://na01.safelinks.protection.outlook.com/?url=https%3A%2F%2Fstat.ethz.ch%2Fmailman%2Flistinfo%2Fr-help&data=02%7C01%7CChaitanya.Ganne%40jefferson.edu%7C2294ae18fd7e4a3b9fcd08d501153840%7C55a89906c710436bbc444c590cb67c4a%7C0%7C0%7C636416113005878432&sdata=QZ6qfoYeF2NGwDcQ2ASnZQCAI0OnYDQ%2FhBBQzhN7fJQ%3D&reserved=0 > PLEASE do read the posting guide https://na01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.R-project.org%2Fposting-guide.html&data=02%7C01%7CChaitanya.Ganne%40jefferson.edu%7C2294ae18fd7e4a3b9fcd08d501153840%7C55a89906c710436bbc444c590cb67c4a%7C0%7C0%7C636416113005878432&sdata=1fr2Lpgsa7T0Y%2BjD%2FO35d%2FezFGKMdzdO0WE4RTNG7Po%3D&reserved=0 > and provide commented, minimal, self-contained, reproducible code.The information contained in this transmission contains privileged and confidential information. It is intended only for the use of the person named above. If you are not the intended recipient, you are hereby notified that any review, dissemination, distribution or duplication of this communication is strictly prohibited. If you are not the intended recipient, please contact the sender by reply email and destroy all copies of the original message. CAUTION: Intended recipients should NOT use email communication for emergent or urgent health care matters.