Thanks Tom! One more quick question, regarding choosing mavericks.pkg or snowleopard.pkg. Will mavericks work for me though I have OS X Lion 10.7.5? I thought I had to choose snowleopard but are still an unexperienced mac user and have really no idea. Just want to dubble check before I run the installation. /Jane ------------------------------------------------------------------------------- Jane Synnergren, PhD Systems Biology Research Center School of Bioscience University of Sk?vde Sweden Contact: email: jane.synnergren at his.se mobile: +46 (0)708 806495 webpage: his.se/synj Postal Address: Visiting address: Box 408 Kanikegr?nd 3A 541 28 Sk?vde Sk?vde From: Thomas Adams <tea3rd at gmail.com<mailto:tea3rd at gmail.com>> Date: Sunday, December 21, 2014 2:06 AM To: Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> Cc: R-help <r-help at r-project.org<mailto:r-help at r-project.org>> Subject: Re: [R] how update to latest version of R on mac Jane, It's possible, since you are using Mac OS X Lion (10.7.5), you need the R version for that, which can be found here: http://cran.r-project.org/bin/macosx/old/R-3.1.1-mavericks.pkg Cheers! Tom On Fri, Dec 19, 2014 at 2:56 PM, Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> wrote: Hi, I get following error when trying to update the affy package to latest version. Error: cannot remove prior installation of package ?affy? I think it is because affy requires R 3.1.1 and I have 3.0.2 I try to find a guide how I do to upgrade from 3.0.2 to latest version on mac, but cannot find any good description. Can anyone guide me? Do I just download R for mac (R-3.1.2-snowleopard.pkg) from <http://ftp.sunet.se/pub/lang/CRAN/bin/macosx/R-3.1.2-snowleopard.pkg> and dubbelclick? What will happen with all installed packages? I have OS X Lion 10.7.5 Which version number is stable and reliable? I also need a guide of how to update to latest version of bioconductor on mac. Descriptions for windows is available everywhere. /Jane --------------------------------------------------------------------------- ---- Jane Synnergren, PhD Systems Biology Research Center School of Bioscience University of Sk?vde Sweden Contact: email: jane.synnergren at his.se<mailto:jane.synnergren at his.se> mobile: +46 (0)708 806495<tel:%2B46%20%280%29708%20806495> webpage: his.se/synj<http://his.se/synj> Postal Address: Visiting address: Box 408 Kanikegr?nd 3A 541 28 Sk?vde Sk?vde ______________________________________________ R-help at r-project.org<mailto:R-help at r-project.org> mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]]
Jane, My sincere apologies; I don't know what I was seeing/thinking -- your original post was correct. Namely, you should download and install: http://ftp.sunet.se/pub/lang/CRAN/bin/macosx/R-3.1.2-snowleopard.pkg (although, I am use to using the main mirror http://cran.r-project.org/bin/macosx/R-3.1.2-snowleopard.pkg) -- but that should not make a difference. The documentation does state... *R 3.1.2* binary for Mac OS X 10.6 (Snow Leopard) *and higher*, signed package. Contains R 3.1.2 framework, R.app GUI 1.65 in 64-bit for Intel Macs. The above file is an Installer package which can be installed by double-clicking. Depending on your browser, you may need to press the control key and click on this link to download the file. So, this should be the way to go. I'm glad you double checked!! Tom On Sun, Dec 21, 2014 at 2:21 AM, Jane Synnergren <jane.synnergren at his.se> wrote:> Thanks Tom! > One more quick question, regarding choosing mavericks.pkg or > snowleopard.pkg. > Will mavericks work for me though I have OS X Lion 10.7.5? I thought I had > to choose snowleopard but are still an unexperienced mac user and have > really no idea. > > Just want to dubble check before I run the installation. > > /Jane > > ------------------------------------------------------------------------------- > Jane Synnergren, PhD > Systems Biology Research Center > School of Bioscience > University of Sk?vde > Sweden > > Contact: > email: jane.synnergren at his.se > mobile: +46 (0)708 806495 > webpage: his.se/synj > > Postal Address: Visiting address: > Box 408 Kanikegr?nd 3A > 541 28 Sk?vde Sk?vde > > From: Thomas Adams <tea3rd at gmail.com> > Date: Sunday, December 21, 2014 2:06 AM > To: Jane Synnergren <jane.synnergren at his.se> > Cc: R-help <r-help at r-project.org> > Subject: Re: [R] how update to latest version of R on mac > > Jane, > > It's possible, since you are using Mac OS X Lion (10.7.5), you need the R > version for that, which can be found here: > http://cran.r-project.org/bin/macosx/old/R-3.1.1-mavericks.pkg > > Cheers! > Tom > > On Fri, Dec 19, 2014 at 2:56 PM, Jane Synnergren <jane.synnergren at his.se> > wrote: >> >> Hi, >> I get following error when trying to update the affy package to latest >> version. >> >> Error: cannot remove prior installation of package ?affy? >> >> I think it is because affy requires R 3.1.1 and I have 3.0.2 >> >> I try to find a guide how I do to upgrade from 3.0.2 to latest version on >> mac, but cannot find any good description. Can anyone guide me? >> >> Do I just download R for mac (R-3.1.2-snowleopard.pkg) from >> <http://ftp.sunet.se/pub/lang/CRAN/bin/macosx/R-3.1.2-snowleopard.pkg> >> and >> dubbelclick? >> >> What will happen with all installed packages? >> I have OS X Lion 10.7.5 >> Which version number is stable and reliable? >> >> I also need a guide of how to update to latest version of bioconductor on >> mac. >> >> Descriptions for windows is available everywhere. >> >> /Jane >> >> >> >> --------------------------------------------------------------------------- >> ---- >> Jane Synnergren, PhD >> Systems Biology Research Center >> School of Bioscience >> University of Sk?vde >> Sweden >> >> Contact: >> email: jane.synnergren at his.se >> mobile: +46 (0)708 806495 >> webpage: his.se/synj >> >> Postal Address: Visiting address: >> >> Box 408 Kanikegr?nd 3A >> 541 28 Sk?vde Sk?vde >> >> ______________________________________________ >> R-help at r-project.org mailing list -- To UNSUBSCRIBE and more, see >> https://stat.ethz.ch/mailman/listinfo/r-help >> PLEASE do read the posting guide >> http://www.R-project.org/posting-guide.html >> and provide commented, minimal, self-contained, reproducible code. >> > > >[[alternative HTML version deleted]]
Thanks for your response Tom, now I have successfully upgraded and my affy package problem seems to be is solved with this latest version of R and latest version of Bioconductor. Thanks! /Jane ------------------------------------------------------------------------------- Jane Synnergren, PhD Systems Biology Research Center School of Bioscience University of Sk?vde Sweden Contact: email: jane.synnergren at his.se mobile: +46 (0)708 806495 webpage: his.se/synj Postal Address: Visiting address: Box 408 Kanikegr?nd 3A 541 28 Sk?vde Sk?vde From: Thomas Adams <tea3rd at gmail.com<mailto:tea3rd at gmail.com>> Date: Sunday, December 21, 2014 4:35 PM To: Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> Cc: R-help <r-help at r-project.org<mailto:r-help at r-project.org>> Subject: Re: [R] how update to latest version of R on mac Jane, My sincere apologies; I don't know what I was seeing/thinking -- your original post was correct. Namely, you should download and install: http://ftp.sunet.se/pub/lang/CRAN/bin/macosx/R-3.1.2-snowleopard.pkg (although, I am use to using the main mirror http://cran.r-project.org/bin/macosx/R-3.1.2-snowleopard.pkg) -- but that should not make a difference. The documentation does state... R 3.1.2 binary for Mac OS X 10.6 (Snow Leopard) and higher, signed package. Contains R 3.1.2 framework, R.app GUI 1.65 in 64-bit for Intel Macs. The above file is an Installer package which can be installed by double-clicking. Depending on your browser, you may need to press the control key and click on this link to download the file. So, this should be the way to go. I'm glad you double checked!! Tom On Sun, Dec 21, 2014 at 2:21 AM, Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> wrote: Thanks Tom! One more quick question, regarding choosing mavericks.pkg or snowleopard.pkg. Will mavericks work for me though I have OS X Lion 10.7.5? I thought I had to choose snowleopard but are still an unexperienced mac user and have really no idea. Just want to dubble check before I run the installation. /Jane ------------------------------------------------------------------------------- Jane Synnergren, PhD Systems Biology Research Center School of Bioscience University of Sk?vde Sweden Contact: email: jane.synnergren at his.se<mailto:jane.synnergren at his.se> mobile: +46 (0)708 806495 webpage: his.se/synj<http://his.se/synj> Postal Address: Visiting address: Box 408 Kanikegr?nd 3A 541 28 Sk?vde Sk?vde From: Thomas Adams <tea3rd at gmail.com<mailto:tea3rd at gmail.com>> Date: Sunday, December 21, 2014 2:06 AM To: Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> Cc: R-help <r-help at r-project.org<mailto:r-help at r-project.org>> Subject: Re: [R] how update to latest version of R on mac Jane, It's possible, since you are using Mac OS X Lion (10.7.5), you need the R version for that, which can be found here: http://cran.r-project.org/bin/macosx/old/R-3.1.1-mavericks.pkg Cheers! Tom On Fri, Dec 19, 2014 at 2:56 PM, Jane Synnergren <jane.synnergren at his.se<mailto:jane.synnergren at his.se>> wrote: Hi, I get following error when trying to update the affy package to latest version. Error: cannot remove prior installation of package ?affy? I think it is because affy requires R 3.1.1 and I have 3.0.2 I try to find a guide how I do to upgrade from 3.0.2 to latest version on mac, but cannot find any good description. Can anyone guide me? Do I just download R for mac (R-3.1.2-snowleopard.pkg) from <http://ftp.sunet.se/pub/lang/CRAN/bin/macosx/R-3.1.2-snowleopard.pkg> and dubbelclick? What will happen with all installed packages? I have OS X Lion 10.7.5 Which version number is stable and reliable? I also need a guide of how to update to latest version of bioconductor on mac. Descriptions for windows is available everywhere. /Jane --------------------------------------------------------------------------- ---- Jane Synnergren, PhD Systems Biology Research Center School of Bioscience University of Sk?vde Sweden Contact: email: jane.synnergren at his.se<mailto:jane.synnergren at his.se> mobile: +46 (0)708 806495<tel:%2B46%20%280%29708%20806495> webpage: his.se/synj<http://his.se/synj> Postal Address: Visiting address: Box 408 Kanikegr?nd 3A 541 28 Sk?vde Sk?vde ______________________________________________ R-help at r-project.org<mailto:R-help at r-project.org> mailing list -- To UNSUBSCRIBE and more, see https://stat.ethz.ch/mailman/listinfo/r-help PLEASE do read the posting guide http://www.R-project.org/posting-guide.html and provide commented, minimal, self-contained, reproducible code. [[alternative HTML version deleted]]