Henrik Bengtsson
2012-Mar-09 05:09 UTC
[Rd] .conflicts.OK no longer working regardless of export(.conflicts.OK) due to "stoplist"
Hi, in (at least) R v2.14.2 and R v2.15.0 alpha, '.conflicts.OK' is not exported and hence to seen by library(). DETAILS: In R-devel thread '[Rd] Suggestion: Not having to export .conflicts.OK in name spaces' on Mar 17-22, 2010 [https://stat.ethz.ch/pipermail/r-devel/2010-March/057017.html] it was discussed that one had to export '.conflicts.OK' in the namespace, otherwise it would not be found in the internal conflict test of library(), cf. print(base::library): ... if(warn.conflicts && !exists(".conflicts.OK", envir = env, inherits = FALSE)) checkConflicts(package, pkgname, pkgpath, nogenerics, ns) ... By replacing envir=env with envir=ns, it will be found. Here is what I get if I use debug(library): Browse[2]> exists(".conflicts.OK", envir=env, inherits=FALSE) [1] FALSE Browse[2]> exists(".conflicts.OK", envir=ns, inherits=FALSE) [1] TRUE This was never implemented, but export(.conflicts.OK) do the job. So far so good, but in rev 56711 (Aug 12, 2011) the following piece of code was added to loadNamespace() [src/library/base/R/library.R], which drops '.conflicts.OK' regardless: ## process exports, seal, and clear on.exit action exports <- nsInfo$exports for (p in nsInfo$exportPatterns) exports <- c(ls(env, pattern = p, all.names = TRUE), exports) ## certain things should never be exported. if (length(exports)) { stoplist <- c(".__NAMESPACE__.", ".__S3MethodsTable__.", ".packageName", ".First.lib", ".onLoad", ".onAttach", ".conflicts.OK", ".noGenerics") exports <- exports[! exports %in% stoplist] } To confirm this is the problem one can load the package with debug(loadNamespace), step through the function and after the above "stoplist" filtering append '.conflicts.OK', e.g. exports <- c(exports, ".conflicts.OK"), and '.conflicts.OK' is yet again visible to library(). SOLUTION: Thus, I propose to do the above 'envir=env' to 'envir=ns' update in library() to fix this. /Henrik> sessionInfo()R version 2.14.2 Patched (2012-02-29 r58590) Platform: x86_64-pc-mingw32/x64 (64-bit)> sessionInfo()R version 2.15.0 alpha (2012-03-07 r58630) Platform: x86_64-pc-mingw32/x64 (64-bit)
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