R devel - Jan 2012 - Command completion of the R binary / Ubuntu

Dear Deepayan and dear list,

I notice a small inconsistency with the command completion of the R CMD
check. --no-latex is deprecated sincs R 2.12.0 and defunct since 2.13.0
but the command line completion still suggests it:

cb at cbdesktop:~/r-devel$ bin/R CMD check --no-<here I hit tab>
--no-clean      --no-examples   --no-latex      --no-vignettes
--no-codoc      --no-install    --no-tests
cb at cbdesktop:~/r-devel$ bin/R CMD check --no-latex
Fehler: '--no-latex' is defunct: use '--no-manual' instead

I gather the command line options could be updated to current R CMD
check in file /etc/bash_completion.d/R:

cb at cbdesktop:~/tmp$ diff R /etc/bash_completion.d/R
244,247c244,245
< 		    --no-install --no-tests --no-vignettes --no-manual \
<           --no-rebuild-vignettes --install-args  --check-subdirs \
<           --extra-arch --multiarch --no-multiarch --force-multiarch \
< 		    --timings  --use-gct --use-valgrind --rcfile"
---
> 		    --no-install --no-tests --no-vignettes --no-latex \
> 		    --use-gct --use-valgrind --rcfile"
I gather from the mailing list archives, that the original is available at
http://code.google.com/p/rcompletion/source/browse/trunk/bash_completion/R

Should I suggest the patch there? Will changes propagate to the packaged
linux distributions from there or should the updated file be brought to
the attention somewhere else?

Best regards,

Claudia






> sessionInfo ()
R version 2.14.1 (2011-12-22)
Platform: x86_64-pc-linux-gnu (64-bit)

locale:
 [1] LC_CTYPE=de_DE.UTF-8       LC_NUMERIC=C
 [3] LC_TIME=de_DE.UTF-8        LC_COLLATE=de_DE.UTF-8
 [5] LC_MONETARY=de_DE.UTF-8    LC_MESSAGES=de_DE.UTF-8
 [7] LC_PAPER=C                 LC_NAME=C
 [9] LC_ADDRESS=C               LC_TELEPHONE=C
[11] LC_MEASUREMENT=de_DE.UTF-8 LC_IDENTIFICATION=C

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base

-- 
Claudia Beleites
Spectroscopy/Imaging
Institute of Photonic Technology
Albert-Einstein-Str. 9
07745 Jena
Germany

email: claudia.beleites at ipht-jena.de
phone: +49 3641 206-133
fax:   +49 2641 206-399




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On Wed, Jan 11, 2012 at 4:16 PM, Claudia Beleites
<claudia.beleites at ipht-jena.de> wrote:
> Dear Deepayan and dear list,
>
> I notice a small inconsistency with the command completion of the R CMD
> check. --no-latex is deprecated sincs R 2.12.0 and defunct since 2.13.0
> but the command line completion still suggests it:
>
> cb at cbdesktop:~/r-devel$ bin/R CMD check --no-<here I hit tab>
> --no-clean ? ? ?--no-examples ? --no-latex ? ? ?--no-vignettes
> --no-codoc ? ? ?--no-install ? ?--no-tests
> cb at cbdesktop:~/r-devel$ bin/R CMD check --no-latex
> Fehler: '--no-latex' is defunct: use '--no-manual' instead
>
> I gather the command line options could be updated to current R CMD
> check in file /etc/bash_completion.d/R:
>
> cb at cbdesktop:~/tmp$ diff R /etc/bash_completion.d/R
> 244,247c244,245
> < ? ? ? ? ? ? ? ? ? --no-install --no-tests --no-vignettes --no-manual \
> < ? ? ? ? ? --no-rebuild-vignettes --install-args ?--check-subdirs \
> < ? ? ? ? ? --extra-arch --multiarch --no-multiarch --force-multiarch \
> < ? ? ? ? ? ? ? ? ? --timings ?--use-gct --use-valgrind --rcfile"
> ---
>> ? ? ? ? ? ? ? ? ? --no-install --no-tests --no-vignettes --no-latex \
>> ? ? ? ? ? ? ? ? ? --use-gct --use-valgrind --rcfile"
>
> I gather from the mailing list archives, that the original is available at
> http://code.google.com/p/rcompletion/source/browse/trunk/bash_completion/R
>
> Should I suggest the patch there? Will changes propagate to the packaged
> linux distributions from there or should the updated file be brought to
> the attention somewhere else?
Thanks for the patch.

I believe only Debian/Ubuntu package it (and this would have been more
appropriate for r-sig-debian). I'll coordinate with Dirk et al to
update the relevant files.

-Deepayan

Dear list,

for the benefit of people searching for this in the future (and as
r-devel archives are searched by RSiteSearch, but r-sig-debian isn't):

- command line completion of the R command doesn't have anything to do
with R
- Deepayan told me that as far as he knows, only Debian (and Ubuntu)
have it, so

R-sig-debian

is the appropriate mailing list. Deepayan moved the discussion there.
Thanks.

Have a nice day,

Claudia



-- 
Claudia Beleites
Spectroscopy/Imaging
Institute of Photonic Technology
Albert-Einstein-Str. 9
07745 Jena
Germany

email: claudia.beleites at ipht-jena.de
phone: +49 3641 206-133
fax:   +49 2641 206-399

Deepayan Sarkar-3 wrote
> 
> I believe only Debian/Ubuntu package it (and this would have been more
> appropriate for r-sig-debian). I'll coordinate with Dirk et al to
> update the relevant files.
> 
> -Deepayan
> 
The bash completion script is also used by the Homebrew package manager on
OS X.

-Charlie

-----
Charlie Sharpsteen
Undergraduate-- Environmental Resources Engineering
Humboldt State University
--
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