Dear list subscriber,
I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw
In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT =
TRUE' is obeyed (this is set in etc/Renviron.site as well as under the users
home directory in .Renviron). That is the hard-coded path to Sweave.sty is
included in the resultant tex-file, whereas if the Sweave file is processed from
cmd.exe as R CMD Sweave foo.Rnw, only \usepackage{Sweave} is included.
Any pointers are much appreciated.
Best,
Bernhard
Output of sessionInfo():> sessionInfo()
R version 2.13.0 (2011-04-13)
Platform: i386-pc-mingw32/i386 (32-bit)
locale:
[1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252
[3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
[5] LC_TIME=German_Germany.1252
attached base packages:
[1] stats graphics datasets grDevices utils methods base
other attached packages:
[1] fortunes_1.4-1
Dr. Bernhard Pfaff
Director
Global Asset Allocation
Invesco Asset Management Deutschland GmbH
An der Welle 5
D-60322 Frankfurt am Main
Tel: +49 (0)69 29807 230
Fax: +49 (0)69 29807 178
www.institutional.invesco.com
Email: bernhard_pfaff at fra.invesco.com
Gesch?ftsf?hrer: Karl Georg Bayer, Bernhard Langer, Dr. Jens Langewand,
Alexander Lehmann, Christian Puschmann
Handelsregister: Frankfurt am Main, HRB 28469
Sitz der Gesellschaft: Frankfurt am Main
*****************************************************************
Confidentiality Note: The information contained in this ...{{dropped:10}}
Bernd
.Renviron is not being read when you do R CMD ... This is documented,
but still puzzling to me. I solved this by using
Sys.setenv("SWEAVE_STYLEPATH_DEFAULT" = "TRUE")
in my .Rprofile (which is being read by R CMD ...). If you were on
linux you could also put it inside your shell profile (like ,.bashrc).
Kasper
On Thu, Apr 21, 2011 at 6:44 AM, Pfaff, Bernhard Dr.
<Bernhard_Pfaff at fra.invesco.com> wrote:> Dear list subscriber,
>
> I am quite puzzled by the behaviour of processing Sweave files within an R
session, i.e.
> Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw
>
> In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT =
TRUE' is obeyed (this is set in etc/Renviron.site as well as under the users
home directory in .Renviron). That is the hard-coded path to Sweave.sty is
included in the resultant tex-file, whereas if the Sweave file is processed from
cmd.exe as R CMD Sweave foo.Rnw, only \usepackage{Sweave} is included.
>
> Any pointers are much appreciated.
> Best,
> Bernhard
>
> Output of sessionInfo():
>> sessionInfo()
> R version 2.13.0 (2011-04-13)
> Platform: i386-pc-mingw32/i386 (32-bit)
>
> locale:
> [1] LC_COLLATE=German_Germany.1252 ?LC_CTYPE=German_Germany.1252
> [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C
> [5] LC_TIME=German_Germany.1252
>
> attached base packages:
> [1] stats ? ? graphics ?datasets ?grDevices utils ? ? methods ? base
>
> other attached packages:
> [1] fortunes_1.4-1
>
>
> Dr. Bernhard Pfaff
> Director
> Global Asset Allocation
>
> Invesco Asset Management Deutschland GmbH
> An der Welle 5
> D-60322 Frankfurt am Main
>
> Tel: +49 (0)69 29807 230
> Fax: +49 (0)69 29807 178
> www.institutional.invesco.com
> Email: bernhard_pfaff at fra.invesco.com
>
> Gesch?ftsf?hrer: Karl Georg Bayer, Bernhard Langer, Dr. Jens Langewand,
Alexander Lehmann, Christian Puschmann
> Handelsregister: Frankfurt am Main, HRB 28469
> Sitz der Gesellschaft: Frankfurt am Main
>
>
> *****************************************************************
> Confidentiality Note: The information contained in this ...{{dropped:10}}
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
On Thu, 21 Apr 2011, Pfaff, Bernhard Dr. wrote:> Dear list subscriber, > > I am quite puzzled by the behaviour of processing Sweave files within an R session, i.e. > Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw > > In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT = > TRUE' is obeyed (this is set in etc/Renviron.site as well as under > the users home directory in .Renviron). That is the hard-coded path > to Sweave.sty is included in the resultant tex-file, whereas if the > Sweave file is processed from cmd.exe as R CMD Sweave foo.Rnw, only > \usepackage{Sweave} is included. > > Any pointers are much appreciated.R CMD Sweave does not read the startup files. Try runnning R --vanilla and Sweave("foo.Rnw"): you will see the same.> Best, > Bernhard > > Output of sessionInfo(): >> sessionInfo() > R version 2.13.0 (2011-04-13) > Platform: i386-pc-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=German_Germany.1252 LC_CTYPE=German_Germany.1252 > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > [5] LC_TIME=German_Germany.1252 > > attached base packages: > [1] stats graphics datasets grDevices utils methods base > > other attached packages: > [1] fortunes_1.4-1 > > > Dr. Bernhard Pfaff > Director > Global Asset Allocation > > Invesco Asset Management Deutschland GmbH > An der Welle 5 > D-60322 Frankfurt am Main > > Tel: +49 (0)69 29807 230 > Fax: +49 (0)69 29807 178 > www.institutional.invesco.com > Email: bernhard_pfaff at fra.invesco.com > > Gesch?ftsf?hrer: Karl Georg Bayer, Bernhard Langer, Dr. Jens Langewand, Alexander Lehmann, Christian Puschmann > Handelsregister: Frankfurt am Main, HRB 28469 > Sitz der Gesellschaft: Frankfurt am Main > > > ***************************************************************** > Confidentiality Note: The information contained in this ...{{dropped:10}} > > ______________________________________________ > R-devel at r-project.org mailing list > https://stat.ethz.ch/mailman/listinfo/r-devel >-- Brian D. Ripley, ripley at stats.ox.ac.uk Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/ University of Oxford, Tel: +44 1865 272861 (self) 1 South Parks Road, +44 1865 272866 (PA) Oxford OX1 3TG, UK Fax: +44 1865 272595
On Thu, Apr 21, 2011 at 6:44 AM, Pfaff, Bernhard Dr. <Bernhard_Pfaff at fra.invesco.com> wrote:> Dear list subscriber, > > I am quite puzzled by the behaviour of processing Sweave files within an R session, i.e. > Sweave("foo.Rnw") versus R CMD Sweave foo.Rnw > > In the former the environmental variable 'SWEAVE_STYLEPATH_DEFAULT = TRUE' is obeyed (this is set in etc/Renviron.site as well as under the users home directory in .Renviron). That is the hard-coded path to Sweave.sty is included in the resultant tex-file, whereas if the Sweave file is processed from cmd.exe as R CMD Sweave foo.Rnw, only \usepackage{Sweave} is included. > > Any pointers are much appreciated. > Best, > Bernhard > > Output of sessionInfo(): >> sessionInfo() > R version 2.13.0 (2011-04-13) > Platform: i386-pc-mingw32/i386 (32-bit) > > locale: > [1] LC_COLLATE=German_Germany.1252 ?LC_CTYPE=German_Germany.1252 > [3] LC_MONETARY=German_Germany.1252 LC_NUMERIC=C > [5] LC_TIME=German_Germany.1252 > > attached base packages: > [1] stats ? ? graphics ?datasets ?grDevices utils ? ? methods ? base > > other attached packages: > [1] fortunes_1.4-1 >SWEAVE_STYLEPATH_DEFAULT is automatically set in Sweave.bat found here (its part of the batchfiles distribution but does not require any other batch file in order to run it): http://batchfiles.googlecode.com/svn/trunk/Sweave.bat This was only just added and has not been tested yet but if anyone would like to try it just put it anywhere on your Windows PATH (or current directory) and issue a command like this from the Windows console: Sweave myfile.Rnw -- Statistics & Software Consulting GKX Group, GKX Associates Inc. tel: 1-877-GKX-GROUP email: ggrothendieck at gmail.com