The most obvious answer is not to do that. You have not used the
standard mechanism to to do that (which should work here as R CMD
INSTALL overrides that one). It's all in ?Startup (look for
R_DEFAULT_PACKAGES).
The simplest way to ignore ~/.Rprofile is to set R_PROFILE_USER to
something else.
On Wed, 16 Feb 2011, Jon Clayden wrote:
> Dear all,
>
> Is there a way to force R CMD INSTALL to ignore ~/.Rprofile and
> similar? I presume it sources these startup files for a reason, but
> I've found that it can cause confusion or problems. In particular, my
> ~/.Rprofile loads a few packages which I very frequently use, but this
> stops me from installing new versions of their dependencies; viz.
>
> $ R CMD INSTALL tractor.base
> * installing to library ?/Library/Frameworks/R.framework/Resources/library?
> * installing *source* package ?tractor.base? ...
> ** R
> ** data
> ** preparing package for lazy loading
> Error: package ?tractor.base? is required by ?tractor.opt? so will not
> be detached
> * removing ?/Library/Frameworks/R.framework/Resources/library/tractor.base?
> * restoring previous
> ?/Library/Frameworks/R.framework/Resources/library/tractor.base?
>
> I've tried R --vanilla CMD INSTALL, but that seems to have no effect.
As documented.
> This is R 2.12.1 on Mac OS X.6.6. Any pointers appreciated.
>
> All the best,
> Jon
>
> ______________________________________________
> R-devel at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-devel
>
--
Brian D. Ripley, ripley at stats.ox.ac.uk
Professor of Applied Statistics, http://www.stats.ox.ac.uk/~ripley/
University of Oxford, Tel: +44 1865 272861 (self)
1 South Parks Road, +44 1865 272866 (PA)
Oxford OX1 3TG, UK Fax: +44 1865 272595