p.c.j.kleiweg at rug.nl
2006-Oct-31 10:47 UTC
[Rd] 'make check' fails on d-p-q-r-tests (PR#9326)
'make check' fails on d-p-q-r-tests:> ##-- non central Chi^2 : > xB <- c(2000,1e6,1e50,Inf) > for(df in c(0.1, 1, 10))+ for(ncp in c(0, 1, 10, 100)) stopifnot(pchisq(xB, df=df, ncp=ncp) == 1) Error: pchisq(xB, df = df, ncp = ncp) == 1 is not all TRUE Execution halted Here is some more testing: xB <- c(2000,1e6,1e50,Inf) for(df in c(0.1, 1, 10)) for(ncp in c(0, 1, 10, 100)) { print(pchisq(xB, df=df, ncp=ncp)); print(pchisq(xB, df=df, ncp=ncp) == 1) } [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE options(digits=22) for(df in c(0.1, 1, 10)) for(ncp in c(0, 1, 10, 100)) { print(pchisq(xB, df=df, ncp=ncp)); print(pchisq(xB, df=df, ncp=ncp) == 1) } [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 0.9999999999999998889777 0.9999999999999998889777 0.9999999999999998889777 1.0000000000000000000000 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 0.9999999999999998889777 0.9999999999999998889777 0.9999999999999998889777 1.0000000000000000000000 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE [1] 0.9999999999999998889777 0.9999999999999998889777 0.9999999999999998889777 1.0000000000000000000000 [1] FALSE FALSE FALSE TRUE [1] 1 1 1 1 [1] TRUE TRUE TRUE TRUE --please do not edit the information below-- Version: platform = i686-pc-linux-gnu arch = i686 os = linux-gnu system = i686, linux-gnu status = major = 2 minor = 4.0 year = 2006 month = 10 day = 03 svn rev = 39566 language = R version.string = R version 2.4.0 (2006-10-03) Locale: LC_CTYPE=nl_NL at euro;LC_NUMERIC=C;LC_TIME=nl_NL at euro;LC_COLLATE=C;LC_MONETARY=nl_NL at euro;LC_MESSAGES=nl_NL at euro;LC_PAPER=nl_NL at euro;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=nl_NL at euro;LC_IDENTIFICATION=C Search Path: .GlobalEnv, package:methods, package:stats, package:utils, package:datasets, package:graphics, package:grDevices, Autoloads, package:base
p.c.j.kleiweg at rug.nl writes:> 'make check' fails on d-p-q-r-tests:...> --please do not edit the information below-- > > Version: > platform = i686-pc-linux-gnu > arch = i686 > os = linux-gnu > system = i686, linux-gnu > status = > major = 2 > minor = 4.0 > year = 2006 > month = 10 > day = 03 > svn rev = 39566 > language = R > version.string = R version 2.4.0 (2006-10-03) > > Locale: > LC_CTYPE=nl_NL at euro;LC_NUMERIC=C;LC_TIME=nl_NL at euro;LC_COLLATE=C;LC_MONETARY=nl_NL at euro;LC_MESSAGES=nl_NL at euro;LC_PAPER=nl_NL at euro;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=nl_NL at euro;LC_IDENTIFICATION=CYou need to be more specific (yes, it is unfortunate that we cannot extract all details about Linuxen from the Version: listing). Which distribution, did you compile youself or use a binary, and if the former: did you set any special compiler flags? -- O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
Peter Kleiweg <p.c.j.kleiweg at rug.nl> writes:> Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: > > > p.c.j.kleiweg at rug.nl writes: > > > > > 'make check' fails on d-p-q-r-tests: > > ... > > > --please do not edit the information below-- > > > > > > Version: > > > platform = i686-pc-linux-gnu > > > arch = i686 > > > os = linux-gnu > > > system = i686, linux-gnu > > > status = > > > major = 2 > > > minor = 4.0 > > > year = 2006 > > > month = 10 > > > day = 03 > > > svn rev = 39566 > > > language = R > > > version.string = R version 2.4.0 (2006-10-03) > > > > > > Locale: > > > LC_CTYPE=nl_NL at euro;LC_NUMERIC=C;LC_TIME=nl_NL at euro;LC_COLLATE=C;LC_MONETARY=nl_NL at euro;LC_MESSAGES=nl_NL at euro;LC_PAPER=nl_NL at euro;LC_NAME=C;LC_ADDRESS=C;LC_TELEPHONE=C;LC_MEASUREMENT=nl_NL at euro;LC_IDENTIFICATION=C > > > > > > You need to be more specific (yes, it is unfortunate that we cannot > > extract all details about Linuxen from the Version: listing). Which > > distribution, did you compile youself or use a binary, and if the > > former: did you set any special compiler flags? > > config.log:11000 lines or so deleted, and you still didn't answer the questions.... (well, I can tell that it is SUSE, and it must be an old version since you are using the ancient 2.95.3 compilers...) -- O__ ---- Peter Dalgaard ?ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
p.dalgaard at biostat.ku.dk
2006-Oct-31 12:20 UTC
[Rd] 'make check' fails on d-p-q-r-tests (PR#9326)
Peter Kleiweg <p.c.j.kleiweg at rug.nl> writes:> Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: >=20 > > p.c.j.kleiweg at rug.nl writes: > >=20 > > > 'make check' fails on d-p-q-r-tests: > > ... > > > --please do not edit the information below-- > > >=20 > > > Version: > > > platform =3D i686-pc-linux-gnu > > > arch =3D i686 > > > os =3D linux-gnu > > > system =3D i686, linux-gnu > > > status =3D=20 > > > major =3D 2 > > > minor =3D 4.0 > > > year =3D 2006 > > > month =3D 10 > > > day =3D 03 > > > svn rev =3D 39566 > > > language =3D R > > > version.string =3D R version 2.4.0 (2006-10-03) > > >=20 > > > Locale: > > > LC_CTYPE=3Dnl_NL at euro;LC_NUMERIC=3DC;LC_TIME=3Dnl_NL at euro;LC_COLLATE=3DC;LC_MONETARY=3Dnl_NL at euro;LC_MESSAGES=3Dnl_NL at euro;LC_PAPER=3Dnl_NL at euro;LC_NAME=3DC;LC_ADDRESS=3DC;LC_TELEPHONE=3DC;LC_MEASUREMENT=3Dnl_NL at euro;LC_IDENTIFICATION=3DC > >=20 > >=20 > > You need to be more specific (yes, it is unfortunate that we cannot > > extract all details about Linuxen from the Version: listing). Which > > distribution, did you compile youself or use a binary, and if the > > former: did you set any special compiler flags? >=20 > config.log:11000 lines or so deleted, and you still didn't answer the questions.... (well, I can tell that it is SUSE, and it must be an old version since you are using the ancient 2.95.3 compilers...) --=20 O__ ---- Peter Dalgaard =C3=98ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907
p.dalgaard at biostat.ku.dk
2006-Oct-31 13:01 UTC
[Rd] 'make check' fails on d-p-q-r-tests (PR#9326)
Peter Kleiweg <p.c.j.kleiweg at rug.nl> writes:> Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: >=20 > > Peter Kleiweg <p.c.j.kleiweg at rug.nl> writes: > >=20 > > > Peter Dalgaard schreef op de 31e dag van de wijnmaand van het jaar 2006: > > >=20 > > > > p.c.j.kleiweg at rug.nl writes: > > > >=20 > > > > > 'make check' fails on d-p-q-r-tests: > > > > ... > > > > > --please do not edit the information below-- > > > > >=20 > > > > > Version: > > > > > platform =3D i686-pc-linux-gnu > > > > > arch =3D i686 > > > > > os =3D linux-gnu > > > > > system =3D i686, linux-gnu > > > > > status =3D=20 > > > > > major =3D 2 > > > > > minor =3D 4.0 > > > > > year =3D 2006 > > > > > month =3D 10 > > > > > day =3D 03 > > > > > svn rev =3D 39566 > > > > > language =3D R > > > > > version.string =3D R version 2.4.0 (2006-10-03) > > > > >=20 > > > > > Locale: > > > > > LC_CTYPE=3Dnl_NL at euro;LC_NUMERIC=3DC;LC_TIME=3Dnl_NL at euro;LC_COLLATE=3DC;LC_MONETARY=3Dnl_NL at euro;LC_MESSAGES=3Dnl_NL at euro;LC_PAPER=3Dnl_NL@euro;LC_NAME=3DC;LC_ADDRESS=3DC;LC_TELEPHONE=3DC;LC_MEASUREMENT=3Dnl_NL at euro;LC_IDENTIFICATION=3DC > > > >=20 > > > >=20 > > > > You need to be more specific (yes, it is unfortunate that we cannot > > > > extract all details about Linuxen from the Version: listing). Which > > > > distribution, did you compile youself or use a binary, and if the > > > > former: did you set any special compiler flags? > > >=20 > > > config.log: > >=20 > > 11000 lines or so deleted, and you still didn't answer the questions.... > > > > (well, I can tell that it is SUSE, and it must be an old version since > > you are using the ancient 2.95.3 compilers...) >=20 > Let me see... >=20 > > Which distribution >=20 > SuSE. It's right there in config.log. > And there is nothing ancient about 2.95.3 compilers.=20 >=20 > > did you compile youself or use a binary >=20 > I sent you config.log. That should give you a clue.=20 >=20 > > did you set any special compiler flags? >=20 > Did you read the first few lines of config.log? >=20 >=20 > Any questions I missed?Why should we care? It's your problem and your job to make it easier for maintainers to track down problems. Copying config.log to a public mailing list could be considered thoughtless, the above is plainly insulting.=20 Maybe someone else will help you, but I have definitely lost all interest. For your information, the problem does not occur in SUSE 9.3 and 10.0. --=20 O__ ---- Peter Dalgaard =C3=98ster Farimagsgade 5, Entr.B c/ /'_ --- Dept. of Biostatistics PO Box 2099, 1014 Cph. K (*) \(*) -- University of Copenhagen Denmark Ph: (+45) 35327918 ~~~~~~~~~~ - (p.dalgaard at biostat.ku.dk) FAX: (+45) 35327907